Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0160
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    32   0.076
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.6  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    25   8.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
 Frame = +2

Query: 239 DIQTVYMGVP-DRLVLIIRDYLSNRSFRCRVEG-------TRSRPRHVTAGVPQGSALSP 394
           DI+  +  +P D+L+ ++   + ++ F   +         T +R ++   G PQGS +SP
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLTENRYKYDIVGTPQGSIVSP 429

Query: 395 LLFSLYINDI 424
           +L ++Y++ +
Sbjct: 430 ILANIYLHQL 439


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 365 GVPQGSALSPLLFSLYINDI 424
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 RERVPGPVTSQPESRKAPPSPRYYL 404
           +E +  P+TS+P  +KA   P+++L
Sbjct: 659 QEPIASPLTSKPTPKKAASLPQFWL 683


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 336 VPSTRHRNERFDK*SRMMSTSLSGTPMYTVCISNRCARLCRT 211
           VPST+H +   D+  +  ++ LS +P  T    N  A L +T
Sbjct: 212 VPSTKHLDGERDRNLKRSTSPLSSSPFVTEAALNE-AELAKT 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,795
Number of Sequences: 5004
Number of extensions: 60807
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)