Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0160
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 33 0.14
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 31 0.73
01_01_1125 - 8920590-8924372 30 1.3
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 30 1.7
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 2.2
01_03_0015 + 11669321-11670070 29 2.2
10_06_0145 + 11215895-11216860 29 3.9
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606... 29 3.9
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 28 5.2
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 5.2
02_02_0298 - 8713660-8714073 28 5.2
12_02_1217 + 27082452-27083593,27085041-27085158 28 6.8
07_01_0594 + 4428440-4429837 28 6.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 6.8
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 28 6.8
11_01_0661 - 5387194-5388486 27 9.0
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 27 9.0
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 33.5 bits (73), Expect = 0.14
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = +2
Query: 317 RCRVEGTRSRPRHVTAGVPQGSALSPLLFSL---------YINDIPRSPETHLALFADDT 469
R + GT S P G+ QG LSPLLF L +N R+P +L+ADD
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADDA 273
Query: 470 AIYY--SCKKKALL 505
I++ C ++ +L
Sbjct: 274 VIFFKPGCNEEEVL 287
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/49 (42%), Positives = 24/49 (48%)
Frame = +3
Query: 288 YETTCRTVRSDVESRERVPGPVTSQPESRKAPPSPRYYLVCISMIYPGL 434
Y TT R V + E PG S ESR +PP P YL C S +Y L
Sbjct: 225 YSTTSRRYERFV-ALEEAPG---SYDESRFSPPFPYDYLYCGSSLYGNL 269
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 458 ADDTAIYYSCKKKALLHDDFRPQLPPWDSISRKWRIDINPTKSTSVLLQKGS 613
+DDT IYY + HDDF P S+ K + I K+ ++Q S
Sbjct: 1210 SDDTDIYYDNLLRNSFHDDFDTYYPAIASLCLKGEL-IKANKAIEAMIQNSS 1260
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 528 YHHGTV-FPGSGAS-TSTPRKAHRCFFKRGRP 617
+HH T P S +S TS P + RC F RG P
Sbjct: 18 HHHSTSSLPSSSSSSTSAPSSSSRCSFSRGGP 49
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +2
Query: 374 QGSALSPLLFSL-YINDIPRSPETH-----LALFADDTAIYYSCKKKALLHDDFRPQLPP 535
Q S +S F L Y+ +S T+ LA+ +++ +YY K L+ +
Sbjct: 1422 QWSTVSEFSFDLHYVKKSIKSSSTYFDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1481
Query: 536 WDSISRKWRIDINPTKSTSV 595
WD ++R+W I + SV
Sbjct: 1482 WDELTRRWNRVIEIMRQNSV 1501
>01_03_0015 + 11669321-11670070
Length = 249
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 259 GSARQTRAHHTRLLVEPFVPMSSRG-NAFPAPSRHSRSPARLRPLPVII 402
G +R TR RLL + + PAPS PA LR LPV++
Sbjct: 88 GDSRTTRRRERRLLRSLAIGAGDDDRDGGPAPSPRGLDPAVLRALPVVV 136
>10_06_0145 + 11215895-11216860
Length = 321
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 276 SCSSYETTCRTVRSDVESRERVPGPVTSQPESRKAPPSPR 395
S S TT +DV S P P +S + PP+PR
Sbjct: 240 SVSEASTTTTADAADVSSTGSSPSPTSSNQAATATPPAPR 279
>01_05_0162 +
18759647-18759663,18760128-18760131,18760270-18760617,
18760801-18761016,18763367-18763435,18763560-18764209,
18764993-18765089,18765170-18765223,18765305-18765435,
18766818-18767008,18767937-18768574
Length = 804
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 206 EGVRQSL-AQRFDIQTVYMGVPD--RLVLIIR-DYLSNRSFRCRVEGTRSRPRHVTAGVP 373
EG QS +QR D+ T+ V RLVLII + S + + G S+ H+ +
Sbjct: 343 EGNEQSGGSQRNDLYTILPWVDGVARLVLIIGLEDASAIAKAAKAIGDASKNEHMRSSFK 402
Query: 374 QGSALSPLLFSLYINDIP 427
+ A+ PLL L D+P
Sbjct: 403 EAGAVKPLLQLLNHTDVP 420
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 332 GTRSRPRHVTAGVPQGSALSP 394
G RSRPR AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 350 RHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIY----YSCKKKALLHDD 514
RH VP+GS L+PL+ L + + + HL L AD +Y + K++ L H D
Sbjct: 240 RHYRYRVPEGSPLTPLVRVL----VAAARKRHLHLPADANELYEVKPQNIKRRLLCHTD 294
>02_02_0298 - 8713660-8714073
Length = 137
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 198 RRRGLLSEWVSAYSALVRCAP*GGALDGRTSVWR 97
R RGLL+ +A A CA G DG WR
Sbjct: 85 RNRGLLTTAAAAGDACAACAAGAGGGDGADGCWR 118
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +3
Query: 264 CQTDSCSSYETTCRTVRSDVESRERVPGPVTSQPESRKAPPSP 392
C T +CS E V SD + + G + + R PP P
Sbjct: 35 CNTPACSDEEEEDDEVGSDADGDDLYGGELEEEDSPRPPPPRP 77
>07_01_0594 + 4428440-4429837
Length = 465
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 291 ETTCRTVRSDVESRERVPGPVTSQPESRKAPPSP 392
E + R DV+ R RVP PV S P + PP P
Sbjct: 13 EESARDDDVDVDGRSRVPVPVPS-PSGWELPPCP 45
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 266 PDRLVLIIRDYLSNRSFRCRVEGTRSRPRHVTAGVPQG---SALSPL-LFSLY 412
P R+ +++RD+LS CR G + R V G + SA S L + SLY
Sbjct: 820 PLRIFMVVRDFLSTLDQVCREVGRMQQDRTVIGGSARSFRISATSSLPVLSLY 872
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 613 RPLLKK--HRCAFRGVDVDAPLPGNTVPWW*LRSEVVMKQRLLLTRVVDGGVIGEERQMG 440
+PLLK+ R VDV+ PG T+ W + V K + V GGV G+ + G
Sbjct: 9 KPLLKRLMRMAGLRPVDVEIE-PGTTMHIWVPKHHVSKKTGTIRPVVEHGGVDGDGEKAG 67
>11_01_0661 - 5387194-5388486
Length = 430
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 339 VPGPVTSQPESRKAPPSPRYY 401
VPGP + E PPS R+Y
Sbjct: 31 VPGPTEDEEEEHATPPSRRWY 51
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 119 MDARVSGAESKLLVYENFVREYEVPEA 39
+DA+V G+ S+L + N+V EVP A
Sbjct: 647 VDAKVKGSRSELAPWTNYVDVEEVPRA 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,679,865
Number of Sequences: 37544
Number of extensions: 471614
Number of successful extensions: 1687
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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