Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0160
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    29   1.9  
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER...    28   4.3  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    28   5.7  
At1g65090.1 68414.m07379 expressed protein                             28   5.7  
At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    27   10.0 

>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 246 CISNRCARLCRTPSLYRRRGLL 181
           C+S R   L RTP LYR R LL
Sbjct: 36  CVSVRLRSLVRTPELYRMRSLL 57


>At4g03370.1 68417.m00459 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 295

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 416 NDIPRSPETHLALFADDTAIYYSCKKKALLHDDFRPQLPPWDS 544
           N +P+SP   +  F  +       K   LLH   +P LPP  S
Sbjct: 80  NQVPQSPSNPIHEFVKNQDSAEDKKNPVLLHQTGKPPLPPKSS 122


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 283 HHTRLLVEPFVPMSSRGNA-FPAPSRHSRSPARLRPLP 393
           HH  L  EP +   ++G A   AP++HS  P R  P P
Sbjct: 343 HHHELAPEPSLSPPTKGFAPASAPTKHSPLPPRNPPCP 380


>At1g65090.1 68414.m07379 expressed protein
          Length = 284

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 291 ETTCRTVRSDVESRERVPGPVTSQPESRKAPPSPR 395
           ET+ RT++ D +S       V  QPE R+AP + R
Sbjct: 153 ETSERTLQDDKKSGNAKSEEVQEQPEKREAPETRR 187


>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 389 SPLLFSLYINDIPRSPETHLALFADDTAIYYSCKKKALLHDDFRPQLPPWDSISRKWRID 568
           +PL+ +   +  PR       ++A + AIY +   K  +HD+ R   PPW  I     ++
Sbjct: 326 TPLIETETEDGPPRLQSLPQWMWASNVAIYSNHFAKVSVHDEDR---PPWGWIDDTAEVE 382

Query: 569 INP-TKSTSVL 598
            +  TK TS+L
Sbjct: 383 SSSCTKFTSLL 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,273
Number of Sequences: 28952
Number of extensions: 341711
Number of successful extensions: 1112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)