Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0159
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 404 RNHSKFFQDEITFCSILLRAGARDKLNSTELKI 306
           RNH K  +++    ++      +DK  S E++I
Sbjct: 248 RNHEKMLREQAKKMNVKSLVSNQDKERSAEVRI 280


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 404 RNHSKFFQDEITFCSILLRAGARDKLNSTELKI 306
           RNH K  +++    ++      +DK  S E++I
Sbjct: 248 RNHEKMLREQAKKMNVKSLVSNQDKERSAEVRI 280


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 368 FCSILLRAGARDKLNSTEL 312
           FCS+++ A  R  L +TEL
Sbjct: 340 FCSVVVIAADRPGLRNTEL 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,673
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)