Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0159
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66420.1 68418.m08377 expressed protein                             29   3.7  
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff...    27   8.6  
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff...    27   8.6  
At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit, ...    27   8.6  

>At5g66420.1 68418.m08377 expressed protein
          Length = 655

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 565 IVQGGWQELDERS*GLCSVRAIGKASMSSSGLLYADDDSMKNI-*NHFNKLNYVSEIIAN 389
           I + G   LD      C   A G       GL+  +DD   NI  +H N   +   ++A+
Sbjct: 267 IPEKGLSALDAPGKPFCDPEATGALINELQGLIQTNDDRQVNIYSHHINDPEFAEALVAS 326

Query: 388 FFKM 377
           F ++
Sbjct: 327 FLEI 330


>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 676

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 259 NSKKRNSLKFSIRFQ*FRSLTD-CVLSLQRFYSRYHIPRIIEN 134
           NS + +  + + RF  F+ L+D C+ +L+    R+ IP ++EN
Sbjct: 290 NSSRVDFEEGNFRFDCFKRLSDDCLKALRLLPKRFEIPDMLEN 332


>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 839

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 259 NSKKRNSLKFSIRFQ*FRSLT-DCVLSLQRFYSRYHIPRIIEN 134
           NS + +  + + RF  F+ L+ DC+ +L+    R+ IP ++EN
Sbjct: 453 NSSRVDFEEGNFRFDCFKRLSVDCLKALRLLPKRFEIPDMLEN 495


>At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1081

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 148 RIIENIPHISSIVFPLSCXXXXFYCL 71
           R++E I +I++IV+P++      YC+
Sbjct: 846 RLLERIAYINTIVYPITSIPLIAYCI 871


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,933
Number of Sequences: 28952
Number of extensions: 218112
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)