Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0157
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.89 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.89 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   3.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   3.6  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   4.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 500 PCRTRSRTHWFRRFH 456
           PCR R +  W R FH
Sbjct: 589 PCRPREQLTWRRNFH 603



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 287 PRSLPSTVGRAPTHH*YPSLP 349
           P S+ S +G APT H   +LP
Sbjct: 105 PVSMASKMGLAPTGHPGAALP 125


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 500 PCRTRSRTHWFRRFH 456
           PCR R +  W R FH
Sbjct: 481 PCRPREQLTWRRNFH 495


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 391 GTNGEEDLWSLWGRLVSNWESEWKRLNQWV 480
           G    E  W L+GR +SN  SE  ++ Q+V
Sbjct: 439 GNPTPEITWELYGRRLSN--SERNQIGQYV 466


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 201 QVKLSRRPTGRFSPSWRKKPSYR 269
           Q +++R P  R    W KK SY+
Sbjct: 111 QTQVARPPPARSPYEWIKKTSYQ 133


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 201 QVKLSRRPTGRFSPSWRKKPSYR 269
           Q +++R P  R    W KK SY+
Sbjct: 111 QTQVARPPPARSPYEWIKKTSYQ 133


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 424 WGRLVSNWESEWKRLNQWVRDLVRQG 501
           WG   + W+ E++ +N  V + V  G
Sbjct: 222 WGGADTPWQREYENVNSTVVNWVNAG 247


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 423 LGSPRQQLGIGMET 464
           LG+P+++L IGM T
Sbjct: 320 LGTPKEKLVIGMPT 333


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 562 SGDVSTPASSCHTMPMK*VGH 500
           SGD++   +  H+ PM+ VG+
Sbjct: 134 SGDIAGLRNKTHSQPMQGVGN 154


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 278 RRTPRSLPSTVGRAPTHH*YPSLPPQAQVMRSKRA 382
           +R+   L   V  +PT    PS PP+ ++  SK A
Sbjct: 81  KRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDA 115


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 277 HQPRYDGFFLQLGEKRPVGRRDSFTCRDSAVCVWIELRRFF 155
           +Q  +DGF L         R  SF+ +D       ELRR F
Sbjct: 133 NQYEFDGFDLDWEYPGAADRGGSFSDKDKFFYFVGELRRAF 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,171
Number of Sequences: 336
Number of extensions: 2970
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)