Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0157
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   0.94 
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   3.8  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    26   5.0  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   6.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.8  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   8.8  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 41  IIVLRINIGVSVPGSCEESNYLINLVLF*YLMTDRASTEKSPELNPNADCRIPTS 205
           ++  R+N+  SV G  E    +I +    +   + +S   SP + PNA    P+S
Sbjct: 394 LLASRLNLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSS 448


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 500 VSHSFHRHRMAATGRRRHVARKEV 571
           +S S++  +    G RRH ARKE+
Sbjct: 15  ISKSYNMKKRPVIGTRRHFARKEI 38


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 210 VSLVGIRQSAFGLSSGDFSVEARSVIKYQN 121
           +S  GI+QS FG  +G   V+   V+K  N
Sbjct: 460 ISFGGIKQSGFGKEAGRLGVQEFMVVKEIN 489


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 504 PTHFIGIVWQLLAGVDTSPEKKLYSSYIKAKSACEK 611
           P HFI     L   VD  P K++ S+Y      C K
Sbjct: 166 PRHFIMCGNNLQLYVDNKPSKEIVSTYPNVYKMCTK 201


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 143 RASTEKSP-ELNPNADCRIPTSETIPTPDRALLAKLEEETVVSRLMRRTPRSLPST 307
           R  +E S   L+   +   P S+ IP+P  +          + R  R  P+SLPST
Sbjct: 371 RTGSESSAVSLSDTTNLNTPISD-IPSPGSSTTCSNLSSPHIKRKSRSPPQSLPST 425


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 305 WTVVSEAFFASASIRRFLPPAWREAPGRASG*FHLSGF 192
           W  + +  + S  + R+LP    E  GRA     + GF
Sbjct: 713 WFGIRDRMYRSGDLGRYLPTGNVECSGRADDQIKIRGF 750


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 275 MRRTPRSLPSTVGRAPTHH*YPSLPPQAQVMRSKRAQLLGLMEKRIFGA 421
           +RR   ++ S +GR    H  PS+   +Q  +S  ++ LG M  R+F +
Sbjct: 42  LRRAKATVWSDIGRVAPLHSSPSIKSSSQNGKSS-SKGLGGMRSRVFSS 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,886
Number of Sequences: 5004
Number of extensions: 51710
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)