Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0157
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1556 + 27692770-27694119 31 0.97
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 30 1.3
01_05_0616 - 23684400-23685329,23686320-23686336,23687977-23688142 30 1.3
03_02_0816 + 11487811-11488708,11488835-11489235 30 1.7
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 29 3.9
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 28 5.2
11_06_0643 - 25773250-25773843 28 6.8
03_05_0431 + 24221881-24224586 28 6.8
03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702... 28 6.8
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 6.8
03_01_0012 - 101584-101898,102274-102531,102932-103474 28 6.8
11_02_0043 - 7690506-7691726 27 9.0
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 27 9.0
>07_03_1556 + 27692770-27694119
Length = 449
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 423 LGSPRQQLGIGMETSKPMGPRPCS--TGCPT 509
LG+P QQL + ++TS PCS GCPT
Sbjct: 113 LGTPAQQLLLAVDTSNDAAWIPCSGCAGCPT 143
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 215 PTPDRALLAKLEEETVVSRLMRRTPRSLPSTVGRAPTHH*YPSLPPQAQ 361
P A A+ EE +R P SLPS + P+ P+LPP ++
Sbjct: 488 PAASAAATAEAEESAARARAAGAPPASLPSQLTADPSGARAPTLPPSSE 536
>01_05_0616 - 23684400-23685329,23686320-23686336,23687977-23688142
Length = 370
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 200 TSETIPTPDRALLAKLEEETVVSRLMRRTPRSLPSTVGR 316
+ E +P A++++L EE +V L R PR + ++GR
Sbjct: 210 SQEVVPGTRDAVVSELREEGIVFTLHRDVPRQIGDSIGR 248
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +2
Query: 188 CRIPTSETIPTPDRALLAKLEEET---VVSRLMRRTPRSLPSTVGRAPTHH*YPSLPPQA 358
C P S TI R T +V+RLM + PS P PP
Sbjct: 102 CDAPRSPTIAPEHRRASCDSPRPTPPAIVARLMGLEESAPPSPAATTPRPLPTRPPPPPP 161
Query: 359 QVMRSKRAQLLGLMEK 406
+ KR +LLG +EK
Sbjct: 162 ETAAEKRRKLLGALEK 177
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 211 YPDARPGASRQAGGRNRRIEADAKNAS 291
YPDA G ++ AGGR R A A + S
Sbjct: 48 YPDAVAGIAKGAGGRGGRFRAPASSIS 74
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 607 SQADFALIYEEYNFFSGDVSTPASSCHTMPMK*VGH 500
S + FA++ YN FSG++ C ++ M VGH
Sbjct: 201 SSSSFAVLDLSYNQFSGNIPHGIGKCCSLRMLKVGH 236
>11_06_0643 - 25773250-25773843
Length = 197
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Frame = +2
Query: 137 TDRASTEKSPELNPNADCRIPTSETIPTPDRALLAKLEE-----ETVVSRLMRRTPRSLP 301
T ++ SP ++ +PTS IP+P ++ +V +R RR LP
Sbjct: 109 TSSSAPPSSPSPGASSPPCLPTSPAIPSPRASVWWSSSSTDVFLNSVSARCCRRYGGRLP 168
Query: 302 STVGRA--PTHH---*YPSLPPQ 355
RA P HH +PSLPP+
Sbjct: 169 RLRLRALLPDHHGRALFPSLPPR 191
>03_05_0431 + 24221881-24224586
Length = 901
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +3
Query: 441 QLGIGMETSKPMGPR---PCSTGCP 506
++G G +T KP R PCS GCP
Sbjct: 348 EVGSGSKTCKPANSRLCLPCSVGCP 372
>03_05_0089 -
20669197-20669280,20669944-20670030,20670143-20670261,
20670838-20671076,20671159-20671215,20671564-20672195,
20673172-20673213,20675849-20676133
Length = 514
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 259 GFFLQLGEKRPVGRRDSFTCRDSAVCVWIELR 164
GF +LG K G TC +A+ VW+ LR
Sbjct: 450 GFVFKLGVKGIWGGMLGGTCMQTAILVWVTLR 481
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 288 LAHYRPQSEELRHITDIPRFRHKLKS 365
+ ++R +SE L+H D+PR HKL+S
Sbjct: 357 IGYHRCKSELLQHGDDLPRKFHKLQS 382
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 612 PSRRLISP*YMRSITSFRATCLRLPVAAIRCL 517
P+RRL+SP S+T+ C + +A ++C+
Sbjct: 19 PTRRLLSPSPSASLTTTTVRCSKGEMAVVKCI 50
>11_02_0043 - 7690506-7691726
Length = 406
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 197 PTSETIPTPDRALLAKLE 250
PT+ P PDRALLA +E
Sbjct: 29 PTAAAAPVPDRALLADIE 46
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 140 DRASTEKSPELNPNADCRIPTSETIPTPDRALLAKLEEETVVSRLMRR 283
D +STEK E N ++ S + P ++ LAK + V S + R+
Sbjct: 529 DCSSTEKPCETINNTKAQLKRSNSTPDIEKRYLAKSNQTMVSSEIARK 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,313
Number of Sequences: 37544
Number of extensions: 382331
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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