Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0157
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       31   0.99 
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_46803| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 498 GCPTHFIGIVWQLLAGVDTSPEKKLYSSYIKAKSACEKVI 617
           G P    G+VWQLL G    P K  Y   IKA SACE++I
Sbjct: 44  GIPNALRGLVWQLLCGSRDMPLKDEYPKLIKANSACERMI 83



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 403 EEDLWSLWGRLVSNWESEWKRLNQWVRDLVRQGVPLIS*ASYGSYWQ---A*TRRPKRSY 573
           E D++  WG+L+ NW+   ++  + VRD+VR+G+P    A  G  WQ        P +  
Sbjct: 12  EGDVYHEWGQLMGNWDDAVRKKPKNVRDMVRKGIPN---ALRGLVWQLLCGSRDMPLKDE 68

Query: 574 TPHILRRNQPARR 612
            P +++ N    R
Sbjct: 69  YPKLIKANSACER 81


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 140 DRASTEKSPELNPNADCRIPTSETIPTPDRALLAKLEEETVVSRLMRRTPR---SLPSTV 310
           +  +T +  +  P    R+PT      P + LL + EEE       R TPR   + P+ +
Sbjct: 278 EERATPRPTKAKPTTRKRMPTERPTKKPTKPLLPEEEEEEEEEEEERPTPRPTKAKPTAI 337

Query: 311 GRAPT 325
            R PT
Sbjct: 338 IRKPT 342


>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 62   IGVSVPGSCEESNYLINLVLF*YLMTDRASTEKSPELNPNADCRIPTSETIPTPDRALLA 241
            IG  +P    E    +N  L   ++ D+++T K+  L+P AD  +  S   P P + +  
Sbjct: 1004 IGDLLPNGTREVFCEMNGALRSVMVEDKSAT-KTLVLHPKADKAVKGSVGAPMPGKVVAV 1062

Query: 242  KLEEETVVSR 271
            +++E  VV +
Sbjct: 1063 RVKENEVVKK 1072


>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 149 STEKSPELNPNADCRIPTSETIPTPDRALLAKLEEETVVSRLMRR-TPRSLPSTVGRAP 322
           ST  SPE   NA  R   +   P+P +    +  E+++ SR   R +P  L    G +P
Sbjct: 38  STTTSPETRDNAHARTKETAGPPSPTKVTPPRSAEDSIRSRDRERDSPARLRDRGGGSP 96


>SB_46803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 137 TDRASTEKSPELNPNADCRIPT---SETIPTPDRALLAKLEEETVVSRLMRRTPRSLPST 307
           T +++  ++P    +   R P+   S  + TP + + A++   + V     RTP ++ ST
Sbjct: 127 TVKSAQVRTPGTVKSTQVRTPSTVKSTQVRTPSKVISAQVRTPSTVKSTQVRTPSTVKST 186

Query: 308 VGRAPT 325
             R P+
Sbjct: 187 QVRTPS 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,002,944
Number of Sequences: 59808
Number of extensions: 408542
Number of successful extensions: 1135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)