Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0156
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 197 1e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 108 8e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 7e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 5e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 1e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 53 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 2e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.065
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.4
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 27 2.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.4
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 4.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 7.5
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 197 bits (481), Expect = 1e-51
Identities = 96/132 (72%), Positives = 102/132 (77%)
Frame = +2
Query: 251 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 430
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 431 QIMFETFNTPAMYVAIQAVLSLYASGVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRMDL 610
QI+FETFN PA YVAIQAVLSLYASG P + P +R+DL
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Query: 611 AGRDLTDYLMKI 646
AGRDLTDYLMKI
Sbjct: 181 AGRDLTDYLMKI 192
Score = 124 bits (300), Expect = 9e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +3
Query: 75 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 108 bits (259), Expect = 8e-25
Identities = 53/131 (40%), Positives = 80/131 (61%)
Frame = +2
Query: 254 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 433
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 434 IMFETFNTPAMYVAIQAVLSLYASGVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRMDLA 613
MFE + +YVAIQAVLSLYA G+ P + R+D+A
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 614 GRDLTDYLMKI 646
GRD T YL+ +
Sbjct: 182 GRDATRYLISL 192
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +3
Query: 81 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1
Query: 511 TTGIVLDSGDGVSHTVPIYEGYALPHAI 594
++G+V+DSGDGV+H VP+YE L H +
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLV 175
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (243), Expect = 7e-23
Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Frame = +2
Query: 254 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 430
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 431 QIMFETFNTPAMYVAIQAVLSLYASGVPP---VSCWTPATVSPTPCPSTKDTHSPTPSLR 601
+ +ET N PA+ ++Q VL+LYAS + C T S P P+ +
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIPSAIQQ 182
Query: 602 MDLAGRDLTDYL 637
++ GRD+TDYL
Sbjct: 183 EEIGGRDVTDYL 194
Score = 69.7 bits (163), Expect = 4e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 251
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +2
Query: 266 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 445
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 446 TFNTPAMYVAIQAVLSLYAS 505
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 242
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 505 RCTTGIVLDSGDGVSHTVPIYEGYALPHAI 594
R TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/82 (39%), Positives = 46/82 (56%)
Frame = +2
Query: 263 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 442
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 443 ETFNTPAMYVAIQAVLSLYASG 508
E+ PA Y+A Q + +ASG
Sbjct: 123 ESLRCPATYLAKQETCAAFASG 144
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +2
Query: 278 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 457
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 458 PAMYVAIQAVLSLYASGVPPVS 523
P++ I + S Y + P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 188
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 511 TTGIVLDSGDGVSHTVPIYEG 573
++GIVL+ G+ SH +P+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +2
Query: 287 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 466
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 467 YVAIQAVLSLYAS 505
Y+ QAV +A+
Sbjct: 134 YLTKQAVCVAFAN 146
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 248
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +2
Query: 278 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 445
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 446 TFNTPAMYVAIQAVLSLYASGV 511
P +A + ++ LYA G+
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGI 193
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 338 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGV 511
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.15
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 259 TSLLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 95
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 94 NAATSSS 74
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 246 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 157
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/73 (31%), Positives = 30/73 (41%)
Frame = +2
Query: 416 REKMTQIMFETFNTPAMYVAIQAVLSLYASGVPPVSCWTPATVSPTPCPSTKDTHSPTPS 595
RE++ Q+ + P+ Y+ LS Y S P S P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRS---PNSY-------PSLLPSTHSPHSPAPL 183
Query: 596 LRMDLAGRDLTDY 634
M A L Y
Sbjct: 184 STMQTALMRLRTY 196
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 506 GVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRMDLAGRDLTDYLMKIP 649
G+PP++ T A +P P +T+ PS+ +++A + M +P
Sbjct: 225 GIPPIAL-TSAGGNPDPLRTTQVFPHSGPSIPLNIAATQVVSQKMSVP 271
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 138 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 251
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -1
Query: 269 GSGYLFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 96
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 512 PPVSCWTPATVSPTPCPSTKDTHSP 586
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 291 PCSMGYLRVRIPLCSVPHLLHKSPSVPYRP 202
P + Y PL +VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 238 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 122
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 380 LLTEAPLNPKANREKMTQIMFETFN 454
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 530 TPATVSPTPCPSTKDTHSPTPSLRMDLA 613
TPA +P P P+ K H P P +R ++
Sbjct: 728 TPAPPTPAPTPAVKH-HPPPPPVRSSIS 754
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 120 TYRSHCLLPTRQLLRRTS*ISEI 52
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 506 GVPPVSCWTPATVSPTPCPSTKDTHSPTPSLR 601
GVPPV P+T P P PS P P+ +
Sbjct: 1206 GVPPVP--PPSTAPPVPTPSAGLPPVPVPTAK 1235
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 509 VPPVSCWTPATVSPTPCPSTKDTHSPTPS 595
VP S P+ P P PS++ P PS
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 503 SGVPPVSCWTPATVSPTPCPSTKDTHSPTPSLRMDLAGRDLTD 631
S VP S T SP P P + + +P P + L R L++
Sbjct: 404 SNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLPPRGLSE 446
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 532 SGDGVSHTVPIYEGYALPHAILAYGLSRSRPH 627
+G G+ H + + +GYA+P ++ S S +
Sbjct: 157 AGRGIGHQIMVEQGYAMPGSMAVASDSHSNTY 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,441
Number of Sequences: 5004
Number of extensions: 70127
Number of successful extensions: 250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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