Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0155
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.2  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 321 VVTSPNPRVYPKHPVSHYPLQLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKHTL 485
           ++++ +P V P H  S+     +NTI  R  T T      S+T+ + PR    TL
Sbjct: 218 IISNKDPVVEPTHSASNAANSGSNTIRARQTTRT-----RSNTLPWSPRVFGPTL 267


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 123 STCEVQASTFRPKF--PAHPV*YNLLQLYNAILTQI 224
           STC+  A TF PKF         NL  L+ A++ QI
Sbjct: 163 STCKYSAFTFLPKFLKEQFSKYANLFFLFTAVVQQI 198


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 127 LVKFRRLPSDQNSLRILYNITCFNFTTRFLHR 222
           L+K +RLP   N+L I + I   N + R ++R
Sbjct: 129 LIKTKRLPKPFNNLLIQFQIQVPNVSRRTVYR 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,034
Number of Sequences: 5004
Number of extensions: 38867
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)