Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0155
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   5.6  
SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_38294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   7.4  
SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)                 28   7.4  
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  27   9.7  

>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 36   QFGRASPARHHYSGPWTSD 92
            ++G++S  RH+  GPW +D
Sbjct: 1638 KYGKSSSCRHYKGGPWAND 1656


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 357 HPVSHYPLQLNNTIHTRIVTMTIVSQINSDTVI 455
           H   H+    NNTI T I+T+TI+  IN+   I
Sbjct: 243 HYHHHHHHHNNNTIITTIITITIIITINNTITI 275


>SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 339 PRVYPKHPVSHYPLQL 386
           P+ YP HP+ HYP  L
Sbjct: 51  PQYYPTHPIPHYPNSL 66


>SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 36  QFGRASPARHHYSGPWTSD 92
           ++G++S  RH+  GPW +D
Sbjct: 74  KYGKSSSCRHYKGGPWAND 92


>SB_38294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 239 SIVSQKSVIINFIVN*KEEKKTHAVCSRCDVT 334
           S V   SVI+NFIV+  E K   AV  R   T
Sbjct: 61  SAVCNGSVIVNFIVSFNETKSEEAVLQRMQTT 92


>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = +3

Query: 330 SPNPRVYPKHPVSHYPLQLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSP 509
           +P+P   P+ P+ H PL+    +  R++   I   +    V++ P      +   AV  P
Sbjct: 762 TPHPPTCPETPIHHDPLE----VLYRLLISPIEDHLTEPEVVFIPEDFTFMIAFGAVKDP 817

Query: 510 ARAL*GTLATVRS 548
                  L  +R+
Sbjct: 818 DGRFLAELKRIRT 830


>SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)
          Length = 772

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = +3

Query: 330 SPNPRVYPKHPVSHYPLQLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSP 509
           +P+P   P+ P+ H PL+    +  R++   I   +    V++ P      +   AV  P
Sbjct: 461 TPHPPTCPETPIHHDPLE----VLYRLLISPIEDHLTEPEVVFIPEDFTFMIAFGAVKDP 516

Query: 510 ARAL*GTLATVRS 548
                  L  +R+
Sbjct: 517 DGRFLAELKRIRT 529


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 315  VAVVTSPNPRVYPKHPVSHYPLQLNN-TIHTRIVTMTIVSQINSDTVIY 458
            +A  T+ N   +P HPV  YP    N TI  RI   +   + N D   Y
Sbjct: 1732 LARATNVNVADWPVHPVPTYPFSFENATISLRIRVSSTRKRENDDQKRY 1780


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,009
Number of Sequences: 59808
Number of extensions: 315531
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)