Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0155
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06610.1 68418.m00747 expressed protein contains Pfam profile...    31   0.65 
At3g19380.1 68416.m02458 U-box domain-containing protein contain...    29   3.4  
At4g01220.2 68417.m00161 expressed protein                             28   4.5  
At2g43570.1 68415.m05413 chitinase, putative similar to chitinas...    27   7.9  
At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    27   7.9  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   7.9  

>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 381 QLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKH 479
           ++ NT  T  +TMT+VS INS T +     + H
Sbjct: 100 EIKNTFVTGKITMTMVSDINSSTAVSSASSVSH 132


>At3g19380.1 68416.m02458 U-box domain-containing protein contains
           similarity to immediate-early fungal elicitor protein
           CMPG1 GI:14582200 [Petroselinum crispum]; contains Pfam
           profile PF04564: U-box domain
          Length = 421

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 360 PVSHYPLQLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAVTSPARAL*GTLAT 539
           P+S + L  N+T+   I    + ++ N    I  P++      V A+ S A A+ GT  +
Sbjct: 62  PLSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVS 121

Query: 540 VRS 548
           VRS
Sbjct: 122 VRS 124


>At4g01220.2 68417.m00161 expressed protein
          Length = 299

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 260 RTFVRQCFI*IYYLCKNRVVKLKQVILYRMRREFWSEGRRLNFTSGFGWNLTEVASV*C 84
           RT++  C I  +    N    L +  +  +  + WS  ++ N   GF W L + A+  C
Sbjct: 236 RTYICSCMI--FLRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVC 292


>At2g43570.1 68415.m05413 chitinase, putative similar to chitinase
           class IV GI:722272 from [Brassica napus]
          Length = 277

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 191 QVILYRMRREFWSEGRRLNFTSGFGWNLTEVASV*C 84
           QV+ ++    FW+   R +F SGFG  +  V S  C
Sbjct: 209 QVLAFKTAFWFWTTNVRTSFKSGFGATIRAVNSREC 244


>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 375 PLQLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAV 500
           PL+++   HT+       S+   D  IYC ++  + +Y  A+
Sbjct: 149 PLEISYPTHTKHSLQLFYSKYRFDHCIYCRKRATYMIYFCAL 190


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 375 PLQLNNTIHTRIVTMTIVSQINSDTVIYCPRKIKHTLYVAAV 500
           PL+++   HT+       S+   D  IYC ++  + +Y  A+
Sbjct: 149 PLEISYPTHTKHSLQLFYSKYRFDHCIYCRKRATYMIYFCAL 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,023
Number of Sequences: 28952
Number of extensions: 200472
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)