Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0154
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    29   0.59 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.1  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.1  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   4.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.5  

>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 214 VNCNTTHYRANWVPGPPSSGRGPFWLILVLNCLWK 110
           V C + H   NW+      G    W ++   C+WK
Sbjct: 382 VRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVWK 416


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 608 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 510
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 285 PPFASWRNSEEARTDRPSQQLRSLN 359
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 440 IGRNRQNPL*IKRIDRDRVECCSVWNK 520
           IG    N L +KR +R   +  SVWN+
Sbjct: 590 IGTTNSNLLRLKRSNRTAAQTASVWNR 616


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 9   RRRDGGHIKGKTKLLFLFNSEHFPIYLPFKNS----LDFHKQFKTKISQNG 149
           R    G    K K+LFL NS + P Y    N+    +D ++ FK    +NG
Sbjct: 4   RHEAAGETSEKPKVLFLLNSYYGPFYDDGDNTGVNVVDLYEAFKV-FEENG 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = +1

Query: 415 VKSAHFLTNRPKSAKSLINQKNRPR*G*VLFRLEQESTIKERGLQRQRAKNR 570
           VK   FLTN   +  SL+ Q NRP     LF  + E T   + L RQ  K R
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRPS---TLFSSDIEYTPTIQ-LNRQVLKTR 722


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 307 LRQLAKGGCA--ARRLSWVTQGFPSHDVV 227
           L QL+  GC   ++ + W+T+ FPS +V+
Sbjct: 194 LTQLSVNGCGLNSKDVQWITETFPSLEVL 222


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -3

Query: 199 THYRANWVPGPPSSGRGPF--WL---ILVLNCLW 113
           T+Y +NW P P  + R  +  WL     +L CLW
Sbjct: 491 TYYMSNWEPPPKETDRNRWKAWLKGYSDLLECLW 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,736
Number of Sequences: 5004
Number of extensions: 63818
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)