Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0154
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    30   1.4  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   1.4  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   1.4  
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346...    28   5.6  
06_01_0092 - 775290-775691                                             28   7.5  

>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -3

Query: 244 PSHDVVKRRPVNCNTTHYRANWV-PGPPSSGRGPFWLILVLNCLWKSREFLKGR*IGKCS 68
           PSH  V   P  C   H R +    G P SG    W +    C    R F+KG     C 
Sbjct: 222 PSHKNVTHGPYLC-PKHTRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGNYCPVCL 280

Query: 67  ELNKNNNFVFPLMC 26
           ++ +++  V P++C
Sbjct: 281 KVYRDSE-VIPMVC 293


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 264 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 407
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 264 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 407
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>01_01_0471 -
           3467275-3467351,3467526-3467895,3468258-3468555,
           3468680-3469734,3469823-3470467
          Length = 814

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 6   RRRRDGGHIKGKTKLLFLFNSEHFPIYLP 92
           RR+ DG ++ G   LL  ++ EHFPI  P
Sbjct: 414 RRQSDGSNLTGCLLLLQFWSWEHFPIGRP 442


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 322 RASSLLRQLAKGGCAARR 269
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,206
Number of Sequences: 37544
Number of extensions: 467282
Number of successful extensions: 1240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)