Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0154
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY044449-1|AAK95951.1| 1907|Homo sapiens muscle alpha-kinase pro...    31   4.7  
CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.                30   8.3  
BC032110-1|AAH32110.3|  322|Homo sapiens PHGDH protein protein.        30   8.3  
BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate dehydr...    30   8.3  
BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate dehydr...    30   8.3  
BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate dehydr...    30   8.3  
AL589734-3|CAI22409.1|  499|Homo sapiens phosphoglycerate dehydr...    30   8.3  
AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate dehydr...    30   8.3  
AL139251-2|CAI22213.1|  499|Homo sapiens phosphoglycerate dehydr...    30   8.3  
AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate dehydr...    30   8.3  
AL031703-1|CAC42094.1|  808|Homo sapiens c302G6.1 (calcium chann...    30   8.3  
AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel, voltag...    30   8.3  
AF223562-1|AAF60162.1|  238|Homo sapiens low-voltage-activated c...    30   8.3  
AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate dehy...    30   8.3  
AF171236-1|AAD51414.1|  405|Homo sapiens 3-phosphoglycerate dehy...    30   8.3  
AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated c...    30   8.3  
AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel ...    30   8.3  
AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate dehy...    30   8.3  
AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-typ...    30   8.3  

>AY044449-1|AAK95951.1| 1907|Homo sapiens muscle alpha-kinase
           protein.
          Length = 1907

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 223 RRPVNCNTTHYRANWVPGPPSSGRGP 146
           R P+ C+T H +A   PGP SS +GP
Sbjct: 59  RGPLICHTGHEQAGREPGPGSSTKGP 84


>CR456795-1|CAG33076.1|  533|Homo sapiens PHGDH protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>BC032110-1|AAH32110.3|  322|Homo sapiens PHGDH protein protein.
          Length = 322

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 10  TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 56


>BC011262-1|AAH11262.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>BC001349-1|AAH01349.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>BC000303-1|AAH00303.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>AL589734-3|CAI22409.1|  499|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 499

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 187 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 233


>AL589734-1|CAI22407.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>AL139251-2|CAI22213.1|  499|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 499

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 187 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 233


>AL139251-1|CAI22212.1|  533|Homo sapiens phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>AL031703-1|CAC42094.1|  808|Homo sapiens c302G6.1 (calcium channel,
           voltage-dependent, alpha 1H subunit) protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 PVNCNTTHYRANWVPGPPSSGRGP 146
           P  C+T   RA   P PPS GRGP
Sbjct: 534 PGACDTRLVRAGAPPSPPSPGRGP 557


>AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel,
           voltage-dependent, T type, alphant regulator of
           chromatin, sub protein.
          Length = 2347

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 PVNCNTTHYRANWVPGPPSSGRGP 146
           P  C+T   RA   P PPS GRGP
Sbjct: 543 PGACDTRLVRAGAPPSPPSPGRGP 566


>AF223562-1|AAF60162.1|  238|Homo sapiens low-voltage-activated
           calcium channel alpha13.2 subunit protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 PVNCNTTHYRANWVPGPPSSGRGP 146
           P  C+T   RA   P PPS GRGP
Sbjct: 120 PGACDTRLVRAGAPPSPPSPGRGP 143


>AF171237-1|AAD51415.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>AF171236-1|AAD51414.1|  405|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 93  TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 139


>AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated
           calcium channel alpha 1H protein.
          Length = 2353

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 PVNCNTTHYRANWVPGPPSSGRGP 146
           P  C+T   RA   P PPS GRGP
Sbjct: 543 PGACDTRLVRAGAPPSPPSPGRGP 566


>AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel
           alpha 1H subunit protein.
          Length = 2353

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 PVNCNTTHYRANWVPGPPSSGRGP 146
           P  C+T   RA   P PPS GRGP
Sbjct: 543 PGACDTRLVRAGAPPSPPSPGRGP 566


>AF006043-1|AAB88664.1|  533|Homo sapiens 3-phosphoglycerate
           dehydrogenase protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLTICHSPFRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFP 242
           T   C    R+ NC  G  V   +LLR L  G CA   L   T+  P
Sbjct: 221 TFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP 267


>AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-type
           calcium channel alpha-1H subunit protein.
          Length = 2373

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 217 PVNCNTTHYRANWVPGPPSSGRGP 146
           P  C+T   RA   P PPS GRGP
Sbjct: 563 PGACDTRLVRAGAPPSPPSPGRGP 586


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,878,136
Number of Sequences: 237096
Number of extensions: 2553867
Number of successful extensions: 4956
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4956
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)