Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0154
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 58  YLIPSIFLFTYLLKILWTSTNNSRPKLAKTV 150
           Y+IP++ +    L +LW  + ++   +A +V
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 241 SHDVVKRRPVNCNTTHYRANWVPGP 167
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 3   IRRRRDGGHIKGKTKLLFLFNSE 71
           I +R+D  H K K+K +   N+E
Sbjct: 65  ISKRKDKEHKKKKSKTILAVNAE 87


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 3   IRRRRDGGHIKGKTKLLFLFNSE 71
           I +R+D  H K K+K +   N+E
Sbjct: 65  ISKRKDKEHKKKKSKTILAVNAE 87


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 271 ALQHIPLSPAGVIAKRPAPIALPNSC 348
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
          protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 39 KTKLLFLFNSEHFPIYLP 92
          K+ +L+LF+    P+Y+P
Sbjct: 5  KSGILYLFDRPSEPVYVP 22


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 271 ALQHIPLSPAGVIAKRPAPIALPNSC 348
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,693
Number of Sequences: 438
Number of extensions: 4857
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)