Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0154
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   6.2  
At2g41990.1 68415.m05194 expressed protein                             27   8.2  

>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 TPTSKGEKPSIRAMAHYVNHHP 608
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 22  GDTSKEKQNCYFY---LIPSIFLFTYLLKILWTSTNNSRPKLAKTVRG 156
           GD     +N   Y   L+  IFLFT    ILW ++ +  PK+  TV+G
Sbjct: 103 GDDDDPFRNVRLYVWLLLSVIFLFTVFSLILWGASKSYPPKV--TVKG 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,875,238
Number of Sequences: 28952
Number of extensions: 349822
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)