Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0153
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   4.2  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   4.2  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.6  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   7.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.7  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   9.7  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 76  GTTSLCLFLVFLLCMSDILGNSSI 5
           GTTS+C+F   LL  ++I+ N+ I
Sbjct: 94  GTTSVCVFAAELLRQAEIMVNAKI 117


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 150 DVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKGNELLAPGISIL*NCYVIITYCNMN 329
           DV N ++  +K    + L    +YK  D  + C K N+ L   + +   C+ + +Y  ++
Sbjct: 144 DVINTNLRVYKNQY-DQLVRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYYGLS 202


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 662 KNLTRILTKYLTLTICHSPFRLRNCWKGRSVRAFSLLRQLAKGG 531
           K+   + T  L  T+  +P    N W  +++R       LA GG
Sbjct: 42  KDRMSVKTNSLLQTLFQTPLPNANIWSNQAIRILMAFNILANGG 85


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 216 YYKVNDYLEDCTKGNELLAPGISI 287
           + +  D+L DC KGN +   G SI
Sbjct: 102 WLRKQDFLNDCKKGNLVREDGFSI 125


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 21  KMSDIHNRNTRNKHKLVVPMSRLHKIRNSF 110
           ++  + N N  NK KL   ++R H+  ++F
Sbjct: 62  QLETVQNENEENKTKLAALLNRFHEETDNF 91


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 33  IHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHL 203
           ++  + R K +   P+S +    NS G  +  +    P+   + +  RFK T +E +
Sbjct: 213 LYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESI 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,151
Number of Sequences: 5004
Number of extensions: 48655
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)