Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0153
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0679 - 5048653-5051394                                           30   1.4  
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541...    29   3.3  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    28   7.6  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    28   7.6  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    28   7.6  
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165...    28   7.6  

>02_01_0679 - 5048653-5051394
          Length = 913

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 135 NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKGNEL 266
           +KIP D+  +H  +    +KE L NK Y  V D + D    +EL
Sbjct: 252 SKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWDTRAFHEL 295


>10_02_0113 +
           5410413-5410471,5411330-5413309,5413535-5413594,
           5416037-5418047
          Length = 1369

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 490 GKPWRYQLNRLAAHPPFASWRNSEKARTDRPFQQLRSLNGEWQIVSVKYFVKIRVKFL 663
           GK +R  L+ L    PF  W N++    D   ++LR+ N E Q+      V+I++  +
Sbjct: 245 GKGFRLCLDFLTDMTPFLVWSNTDTI-IDSAIKKLRTSNPETQVQMAYKLVEIQLSLI 301


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 63  KLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLE 242
           KL++ ++RL +    F   +  +Y K P+DVQ  H       + + +C K   K ND ++
Sbjct: 666 KLLLEVNRLLRPGGLFVWSATPVYRKTPEDVQIWH---DMAALTKSMCWKMVKKTNDTVD 722

Query: 243 D 245
           +
Sbjct: 723 E 723


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 511 LNRLAAHPPFASWRNSEKARTDRPFQQLRSLNG 609
           L+R +   PF SW N  +A  D+    L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 511 LNRLAAHPPFASWRNSEKARTDRPFQQLRSLNG 609
           L+R +   PF SW N  +A  D+    L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


>02_01_0252 -
           1657268-1657692,1657727-1658445,1658761-1659089,
           1659223-1659375,1659430-1659561,1659748-1659852,
           1660020-1660193,1660283-1660352,1660458-1660639,
           1660738-1660847,1660948-1661052,1661153-1661231,
           1662128-1662168,1662283-1662358,1662455-1662589
          Length = 944

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 142 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSIC 2
           ++L R+T +     R  C   +   SL   + FL+ +S ++   SIC
Sbjct: 252 LVLSRKTPRSDKSIRAACRYFLIECSLAFIVAFLINVSVVVVAGSIC 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,255
Number of Sequences: 37544
Number of extensions: 333409
Number of successful extensions: 883
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)