Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0153
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81493-4|CAB04041.1|  165|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.0  
EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folat...    27   9.0  

>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 63  KLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLE 242
           KL+V M    ++R    CLS     +  Q ++ L +     T+++   NK   K+N YL+
Sbjct: 537 KLLVEMLDTSQLRGISKCLS----QEFMQPLRVLEVIEAMITVRQFAGNKTVLKMNQYLD 592

Query: 243 DCTK 254
           +  K
Sbjct: 593 ELAK 596


>Z81493-4|CAB04041.1|  165|Caenorhabditis elegans Hypothetical
           protein F01D5.5 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 189 IKEHLCNKAYYKVNDYLEDCTKGNELLAPG 278
           +K   C+  +YK +D +++C K      PG
Sbjct: 114 VKNGFCSNCFYKCSDRIKNCAKSCGFCTPG 143


>AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical
           protein T27B7.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 55  TNTSLLCR*VGYIRYEIHSGVCLC-ACTTKSHKMFRT-YIYIGLRKLLKNICAIKLTIKS 228
           TNT  LCR  G   +  H GV  C AC     + F++ +I+   +K  K       T K 
Sbjct: 2   TNTLFLCRICGKNAHGTHFGVITCRACGVFFRRSFKSKWIF---KKCKKEDEGKICTCKP 58

Query: 229 MII*KIAQRGMSCSLREFQY 288
             + K  + GMS   + FQY
Sbjct: 59  CRLQKCVEMGMSS--KNFQY 76


>Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical
           protein C06H2.4 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 87  LHKIRNSFGCLSVRLYNKIPQD-VQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKGNE 263
           L ++++    +S+R +  + Q  V+++   +  K +K     + + K+++ L+ C+K  E
Sbjct: 181 LPRVKSEKAKVSMRAHEIVEQQTVESVESVQTPKAVKMSYTREYFKKISEELQICSKNQE 240

Query: 264 LL 269
           LL
Sbjct: 241 LL 242


>EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folate
           carrier protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 87  LHKIRNSFGCLSVRLYNKIPQD-VQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKGNE 263
           L ++++    +S+R +  + Q  V+++   +  K +K     + + K+++ L+ C+K  E
Sbjct: 181 LPRVKSEKAKVSMRAHEIVEQQTVESVESVQTPKAVKMSYTREYFKKISEELQICSKNQE 240

Query: 264 LL 269
           LL
Sbjct: 241 LL 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,359
Number of Sequences: 27780
Number of extensions: 292203
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)