Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0153
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.5  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   6.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 644 LTKYLTLTICHSPFRLRNCWKGRS 573
           L  Y T +IC +   L++ W GRS
Sbjct: 174 LVLYTTPSICTALGYLKDAWIGRS 197


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 644 LTKYLTLTICHSPFRLRNCWKGRS 573
           L  Y T +IC +   L++ W GRS
Sbjct: 169 LVLYTTPSICTALGYLKDAWIGRS 192


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 518 ALQHIPLSPAGVIAKRPAPIALSNSC 595
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 488 SHDVVKRRPVNCNTTHYRANWVPGP 414
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 518 ALQHIPLSPAGVIAKRPAPIALSNSC 595
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 58  LFLVFLLCMSDILGNSSIC 2
           + LV L CM D   NS IC
Sbjct: 278 VLLVRLACMFDAQTNSMIC 296


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 91  IRYEIHSGVCLCACTTKSHKMFRTYIYIGLRKLLKNIC 204
           + Y + SG+ LC   T +  +  T I  G+++     C
Sbjct: 694 LSYVLLSGILLCYLVTFALVLRPTDIVCGIQRFAAGFC 731


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,480
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)