Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0153
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22940.1 68417.m03312 protein kinase family protein contains ...    30   1.2  
At1g03740.1 68414.m00354 protein kinase family protein contains ...    29   2.8  
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    28   6.4  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   6.4  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    27   8.4  

>At4g22940.1 68417.m03312 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 142 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSI 5
           I++ R+ D HPN  ++   +L+   S  L+L+F     D+LG SS+
Sbjct: 151 IIILRKLD-HPNVIKLEGLMLVDHDSSTLYLIFEYMEHDLLGLSSL 195


>At1g03740.1 68414.m00354 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 542

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 142 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSI 5
           I++ RR D HPN  + L  L+    S  L+LVF     D+LG SS+
Sbjct: 261 IIVMRRLD-HPNVLK-LEGLITAPVSSSLYLVFEYMDHDLLGLSSL 304


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 567 GLFAITPAGERGMCCKAIKLVTPGFSQSRRCKTTASEL*YDSL*GELGTGPPL 409
           GL +    G+   CC+A  +++     + RCK  A ++  +S    +GT  PL
Sbjct: 442 GLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPL 494


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 491 ENPGVTNLIALQHIPLSPAGVIAKRPAPIALSNS 592
           E P   N + +QH+PL P  +I++    IA   S
Sbjct: 87  ERPSQLNQVQVQHVPLGPPTLISQPNVSIASGTS 120


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 121 LCACTTKSHKMFRTYIYIGLRKLLKNICAIKLTIKSM 231
           L  C+ ++ K F T++ +GLRKL  + C I+    S+
Sbjct: 744 LYICSNRNLKTFSTHLPMGLRKLDLSNCGIEWVTDSI 780


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,590
Number of Sequences: 28952
Number of extensions: 254658
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)