Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0152
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    29   0.39 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   0.91 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.8  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   6.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.5  

>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 185 PAQSGVF-PWRQMLNEMWTSTVQRIRLLSSSHRLHIVLCLRVWRRP 319
           P   G F PW   LN MW S      + SS   L   L LR W++P
Sbjct: 813 PIAMGFFLPWGIYLNPMWASAAM---MFSSLSVLASSLLLRRWKKP 855


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 179 CRERSEAARHSVNTANVKSASAL*DL-IVKAHRSRSLGNSTQHLHSSSHHRRIVHEKT 9
           C  R E    +V+T +  S S      I   + S +L  +T HL SSS H    H  +
Sbjct: 579 CSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSS 636


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 246 SRGFGYYPHPTDCTLYYVCVFGGALLE 326
           +R  G Y H   C    +C+FGG LL+
Sbjct: 183 ARPSGRYGHTISCLGSKICLFGGRLLD 209


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 101 IVKAHRSRSLGNSTQHLHSSSHHRRIVHEKTR 6
           ++   R+  +  + QH   SSHH+   H+K++
Sbjct: 533 VISEIRTTKIYKAQQHKQKSSHHKHHHHKKSK 564


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 90  CLYDEVLQRTRAFYVSRVDRMP--CRLRPFAASIRPSQECSRG 212
           C YD VL+RT   YVS   +     +L P A S   S +   G
Sbjct: 658 CFYDRVLERTDEPYVSTEGKATGFQQLHPLALSDNSSNQIFTG 700


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 367 VWSSWLYISPPVHDSSRAPPNT 302
           V S+W  I P V D S  PP T
Sbjct: 395 VLSAWCGIRPLVRDPSTVPPGT 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,695
Number of Sequences: 5004
Number of extensions: 43583
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)