Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0152
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0175 + 20642877-20643618,20643844-20643955,20644052-206441... 32 0.31
02_05_0489 - 29452520-29453104 31 0.53
12_02_0460 + 19360075-19360320,19361189-19361368 29 2.8
09_06_0202 - 21550460-21550813,21550858-21550944,21551887-21551892 29 2.8
12_02_1224 + 27158810-27161366,27161593-27161969 29 3.8
07_01_0942 + 7957776-7958004,7958113-7958708 29 3.8
10_08_0333 - 16850267-16851802 28 5.0
12_02_0058 + 13015401-13016654 28 6.6
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 27 8.7
03_02_0713 + 10615886-10616650 27 8.7
>02_04_0175 +
20642877-20643618,20643844-20643955,20644052-20644174,
20644258-20644509,20644510-20644639,20644719-20644928,
20645280-20645426
Length = 571
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 112 SALALFTLAVLTECLAASDRSRHRSG----PVRSVPVAANVKRDVDFDCPEDSATILIPP 279
+A LF + + CL AS R R R G PV+ +PV+A K P+D +
Sbjct: 27 AAFVLFLVLLSVLCLLASRRRRRRRGPNTSPVQQLPVSAPPKNPQKVKAPKDIQEVPAQA 86
Query: 280 TA 285
TA
Sbjct: 87 TA 88
>02_05_0489 - 29452520-29453104
Length = 194
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 158 PPQTVRGIDPAQSGVFPWRQMLNEMWTSTVQRIRLLSSSHRLHIV 292
PP+ VR D + FPW Q ++ W + + L SS LH++
Sbjct: 64 PPELVRRGDDDEPSKFPWNQSSSKGWGGSKDNVN-LPSSFLLHLL 107
>12_02_0460 + 19360075-19360320,19361189-19361368
Length = 141
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -2
Query: 412 PALAPSQPTLRGQSHVWSSWLYISPPVHDSSRAPP 308
PA+AP P+L SH W S PP SS PP
Sbjct: 6 PAVAPLAPSLPELSHSWGSQFSNLPPFASSS--PP 38
>09_06_0202 - 21550460-21550813,21550858-21550944,21551887-21551892
Length = 148
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 384 NVGCDGASAGGGEELERF 437
++G DG S GGG EL RF
Sbjct: 99 DIGSDGGSGGGGRELTRF 116
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 276 WDEDSSRILWTVEVHISFNICRHGNTPDWAGSM 178
W +S L + V I C HG P W G+M
Sbjct: 193 WPPESLMALRRLRVLILSTTCMHGGVPAWLGNM 225
>07_01_0942 + 7957776-7958004,7958113-7958708
Length = 274
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = -2
Query: 418 PPPALAPSQPTLRGQ---SHVWSSWLYISPPVHDSSRAPP 308
P P+ A S PT W+S + PPV S R PP
Sbjct: 36 PSPSAAASTPTAASAPTGGSWWTSASWTCPPVRSSGRCPP 75
>10_08_0333 - 16850267-16851802
Length = 511
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 312 GALLESCTGGLMYSHELQTCDWPRNVGCDGASAGGGE 422
G L++ T +YSH C P N+ C AS E
Sbjct: 404 GNQLQTFTDPSIYSHNSGLCGPPLNISCTNASVASDE 440
>12_02_0058 + 13015401-13016654
Length = 417
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 243 LSRGFGYYPHPTDCTLYYV-CVFGGALLESCTGGLMYSHELQTCDWPRNVGCDGASAGGG 419
L GF + P P YY+ C+ G + T G ++S ++ D PR++ A
Sbjct: 10 LELGFRFNPSPEQVVTYYLPCLVAGQQPKD-TEGCIHSADVYGADEPRDLAGKYAPVARS 68
Query: 420 EELERF 437
+RF
Sbjct: 69 SNGDRF 74
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +3
Query: 186 RPSQECSRGGKC*TRCGLRLSRGFGYYPHPTDCTLYYVCVFGGALLESCTGGLMY 350
R + CS C L S F + P C + CVFGG LL + G L Y
Sbjct: 422 RKAAVCSISSVCVGVVVLTTSASFTFLPFLLRC---FFCVFGGLLLLAGLGVLCY 473
>03_02_0713 + 10615886-10616650
Length = 254
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 159 RLRPFAASIRPSQECSRGGKC*TRCGLRLSRGFGYYPHPTDCTLYYVCVFGG 314
RLR F +S+ S++ R GK + R Y+PHP L + +GG
Sbjct: 72 RLRSFESSVGLSRKAFRLGKFVQ--SINALRAAAYHPHPHVHPLLVLLAYGG 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,999,261
Number of Sequences: 37544
Number of extensions: 373146
Number of successful extensions: 1264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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