Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0152
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 40 0.001
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 39 0.002
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 39 0.002
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 35 0.051
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 31 0.83
Z72502-16|CAI46573.2| 409|Caenorhabditis elegans Hypothetical p... 30 1.5
Z70782-12|CAI46574.2| 409|Caenorhabditis elegans Hypothetical p... 30 1.5
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 30 1.5
Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical p... 28 4.4
AF098985-7|AAC67417.1| 306|Caenorhabditis elegans Hypothetical ... 28 4.4
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 28 5.9
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 27 7.7
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 27 7.7
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 279 DCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNV-GCDGASAGGGEELERFSERDD 452
+C ++Y CV+G ++ +C G +++ L CDWP V C G ++ + DD
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAVPSCSGQASDSNSSYGSSTYNDD 1315
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLE--SCTGGLMYSHELQTCDWPRNV-GCDGASAGGGE 422
G Y + DC+ C FGG L E SC L ++ CD+P+ V GC+ GE
Sbjct: 1188 GLYRNERDCSAILQC-FGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGCENHGQTNGE 1244
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVGC 395
G+YP+ +C L+ +C+ + SC GL YS L+ C GC
Sbjct: 487 GFYPNSNNCGLFVLCLSSKSYSMSCPSGLQYSASLKYCTTSTASGC 532
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVGC 395
G++ P+DC + CV G + C GL + + CD P C
Sbjct: 570 GFFGVPSDCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKC 615
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 YYVCVFGGALLESCTGGLMYSHELQTCDWPRNV-GCDGASAGGGE 422
+ C G A + C L+Y+ L CDW NV GC+G+ GE
Sbjct: 41 FLTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCEGSGESSGE 85
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVG-CDG 401
G +P+ T + C G A + C L+++ + CDWPR+V C G
Sbjct: 253 GIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAG 301
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVG-CDGASAGGGEE 425
GY+ + + C G A++ C GL +S CD+ NV C S GEE
Sbjct: 313 GYFSFGQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQETS---GEE 366
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 YYVCVFGGALLESCTGGLMYSHELQTCDWPRNV-GCDGASAGGGE 422
+ C G A + C L+Y+ L CDW NV GC+G+ GE
Sbjct: 41 FLTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCEGSGESSGE 85
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVG-CDG 401
G +P+ T + C G A + C L+++ + CDWPR+V C G
Sbjct: 253 GIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAG 301
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVG-CDGASAGGGEE 425
GY+ + + C G A++ C GL +S CD+ NV C S GEE
Sbjct: 313 GYFSFGQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQETS---GEE 366
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 252 GFGYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNV 389
G G YP + CV G A C L+Y L+ CDW NV
Sbjct: 29 GDGMYPLGACEPRFLACVSGEARYMDCPEDLVYHKNLEFCDWRHNV 74
Score = 34.7 bits (76), Expect = 0.051
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVG-CDGASAG 413
GY+ + + C G ++ C GLM+S + Q CD+ NV CD S+G
Sbjct: 244 GYFSFGRCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLESSG 296
Score = 34.3 bits (75), Expect = 0.067
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 276 TDCT-LYYVCVFGGALLESCTGGLMYSHELQTCDWPRNV 389
++C+ +++ C G A +C L+++ + +CDWP+NV
Sbjct: 188 SECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNV 226
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVGCDGASAGGGEELE 431
G Y T + Y +C G SC+ L+Y + C W + D S GE E
Sbjct: 125 GVYSSGTCSSSYIICNSGSPRFLSCSTPLIYDPTNKKCSWKGMI--DECSQVSGEYCE 180
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 30.7 bits (66), Expect = 0.83
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNVGCDGASAGGGEEL 428
G Y P Y C+ G +L+ SC GL Y+ + C + V D G G ++
Sbjct: 895 GIYALPYCSQDYVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTV--DTCKIGKGSDI 949
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 285 TLYYVCVFGGALLESCTGGLMYSHELQTCDWPRNV-GCDG 401
+++Y+C G + +C L+++ + CD+ NV C G
Sbjct: 589 SVFYICANGQVVATTCPANLIFNPYVGECDYSTNVRDCQG 628
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 282 CTL-YYVCVFGGALLESCTGGLMYSHELQTCDWPRN 386
CT ++ C G A C G L+++ TCD+ N
Sbjct: 446 CTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAEN 481
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 291 YYVCVFGGALLESCTGGLMYSHELQTCDW 377
Y VC G A +C L+Y+ + QTC++
Sbjct: 1041 YIVCDNGRAFSGTCIAPLVYNGDTQTCNY 1069
>Z72502-16|CAI46573.2| 409|Caenorhabditis elegans Hypothetical
protein C08B6.14 protein.
Length = 409
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 246 SRGFGYYPHPTDCTLYYVCVFG 311
SR F + PTD T Y VCVFG
Sbjct: 77 SRKFNFRTLPTDLTSYKVCVFG 98
>Z70782-12|CAI46574.2| 409|Caenorhabditis elegans Hypothetical
protein C08B6.14 protein.
Length = 409
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 246 SRGFGYYPHPTDCTLYYVCVFG 311
SR F + PTD T Y VCVFG
Sbjct: 77 SRKFNFRTLPTDLTSYKVCVFG 98
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 258 GYYPHPTDCTLYYVCVFGGALLESCTGGLMYSHELQTCDWPR 383
GY P +C +Y C G SC G ++ TCD R
Sbjct: 164 GYKPDVYNCKNFYQCASGLWTQRSCGEGTIWDQHKLTCDHNR 205
>Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical
protein C16C10.11 protein.
Length = 154
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 184 SGPVRSVP-VAANVKRDVDFDCPEDSATILIPPTAHCTMFACLAAPYLNHALVDLCTATS 360
S PVRS P AA P +A PP A M A + AP L+ AT+
Sbjct: 12 SAPVRSAPRPAAQSSFAAPPPRPAAAAPAYHPPAAPTPMGAPMGAPSQGPGLMKQMAATA 71
Query: 361 SKRAIGRA 384
AIG A
Sbjct: 72 GGVAIGSA 79
>AF098985-7|AAC67417.1| 306|Caenorhabditis elegans Hypothetical
protein C08G5.6 protein.
Length = 306
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 333 CMIQVGRRQTRKHSTMCSRWDEDSSRILWTVEVH 232
C I V R T K W+++ S++ W++ H
Sbjct: 199 CFILVSWRLTTKKQRPRGNWEKEGSKLFWSIYEH 232
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 98 VKAHRSRSLGNSTQHLHSSSHHRRIVHEKTR 6
V+AHR + H +SSS+H ++ +K R
Sbjct: 481 VQAHRGSGTYQQSHHSYSSSNHSSLITDKPR 511
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 153 PCRLRPFAASIRPSQECSRGGKC*TRCGLR 242
PC P ++RP +C+ KC RC LR
Sbjct: 462 PC-CDPLTCTLRPHAQCAAHHKCCHRCELR 490
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 153 PCRLRPFAASIRPSQECSRGGKC*TRCGLR 242
PC P ++RP +C+ KC RC LR
Sbjct: 462 PC-CDPLTCTLRPHAQCAAHHKCCHRCELR 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,317
Number of Sequences: 27780
Number of extensions: 276123
Number of successful extensions: 834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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