Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0152
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.43 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 423 PRHHQRWHHHSLRCAAN 373
           P++HQ++HH  L  +AN
Sbjct: 7   PKYHQQFHHQQLFSSAN 23


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 25  MRRW*LDECKCCV-LFPKDRDLCAFTMRSYS 114
           MRR  +  C+  + +FP D  LC+F + S S
Sbjct: 178 MRRHLILSCQGRLNIFPFDDPLCSFAIESIS 208


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 25  MRRW*LDECKCCV-LFPKDRDLCAFTMRSYS 114
           MRR  +  C+  + +FP D  LC+F + S S
Sbjct: 178 MRRHLILSCQGRLNIFPFDDPLCSFAIESIS 208


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 25  MRRW*LDECKCCV-LFPKDRDLCAFTMRSYS 114
           MRR  +  C+  + +FP D  LC+F + S S
Sbjct: 229 MRRHLILSCQGRLNIFPFDDPLCSFAIESIS 259


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 25  MRRW*LDECKCCV-LFPKDRDLCAFTMRSYS 114
           MRR  +  C+  + +FP D  LC+F + S S
Sbjct: 178 MRRHLILSCQGRLNIFPFDDPLCSFAIESIS 208


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 435 TAPTPRHHQRWHHHS 391
           + P P HH   H HS
Sbjct: 410 STPGPHHHTMGHGHS 424



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 77  SLGNSTQHLHSSSHH 33
           ++G+   H+H++ HH
Sbjct: 418 TMGHGHSHIHATPHH 432


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 178 HRSGPVRSVPVAANVKRDV 234
           HR  P +S   +  VKRD+
Sbjct: 125 HRDLPGKSTTTSVEVKRDI 143


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 178 HRSGPVRSVPVAANVKRD 231
           HR  P +S    A VKRD
Sbjct: 136 HRDLPGKSTTTTAEVKRD 153


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 417 HHQRWHHHSLRCAA 376
           HH + HHH L+  A
Sbjct: 142 HHLQNHHHHLQSTA 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,431
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)