Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0152
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    30   1.3  
At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase...    28   4.1  
At1g72250.1 68414.m08353 kinesin motor protein-related                 27   7.2  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    27   9.5  

>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 169 RSRHRSGPVRSVPVAANVKRDVDFDCPEDSATILI 273
           R   ++ P R +  +  V+R++D+D  EDS+++LI
Sbjct: 113 RRGDKTSPARRLDRSDAVRRNIDYDAGEDSSSLLI 147


>At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase C,
           putative similar to phosphoinositide specific
           phospholipase C GI:857374 from [Arabidopsis thaliana]
          Length = 584

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 415 PPALAPSQPTLRGQSHVWSSWLYISPPVHDSSRAPPNTQT*YNVQSV 275
           P A  P + TLR   ++   W Y  P  H    +PP+  T   +  V
Sbjct: 447 PEATLPVKTTLRVTIYMGEGWYYDFPHTHFDRYSPPDFYTRVGIAGV 493


>At1g72250.1 68414.m08353 kinesin motor protein-related
          Length = 1195

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 176 RERSEAARH--SVNTANVKSASAL*DLIVKAHRSRSLGNSTQHLHSSSHH 33
           R+ SE   H   +  A VKS   + D++     +R++G +T + HSS  H
Sbjct: 648 RQLSEGNHHVPGLVEAPVKSIEEVWDVLKTGSNARAVGKTTANEHSSRSH 697


>At5g27650.1 68418.m03313 PWWP domain-containing protein
           hypothetical protein F22F7.12 - Arabidopsis thaliana,
           EMBL:AC009606
          Length = 1072

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 412 PALAPSQP-TLRGQSHVWSSWLYISPPVHDSSRAPPN 305
           P   P +P   +      S WL  +PP+H  +  PPN
Sbjct: 870 PKAEPREPENTKEDDEPQSQWLDQAPPLHQPTLPPPN 906


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,759,870
Number of Sequences: 28952
Number of extensions: 262758
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)