Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0151
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   3.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   7.3  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    25   9.6  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 453 YARQ**FETRIKSSNFLTGN-YYYSDIKVPYILSVHT 560
           YA+    E  ++S +F+T + +YY D+K   I S HT
Sbjct: 127 YAKVSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 132 LHWPFDCRVGHRCPTRRTEVIMSI---SVTKAPPLPS 233
           LH PF    G  CP      +++I   S+   PP+PS
Sbjct: 238 LHDPFSQTFGKECPISTAPPVLNIGDRSLETPPPIPS 274


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 194 NYFSAPRRAPVTYTTVKGPMQFFSCIICEVFLTSK 90
           NYF   +R P  + +  G + F  C++  +  TS+
Sbjct: 488 NYFKLKKRDPQQFRSASGRLGFMVCLLEILSFTSR 522


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 147 QRANAIFLMHNMRSFFDFE-IMNFV 76
           +RA +I   HN++S FD E I  FV
Sbjct: 887 ERATSIMTKHNLKSSFDIEAIKEFV 911


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 505 VKKFELFILVSNYYCLA*CMAILDARILL 419
           V  F+   +V N+ CLA      DARIL+
Sbjct: 57  VSNFQKIAMVDNHVCLAFAGLNADARILI 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,221
Number of Sequences: 5004
Number of extensions: 45574
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)