Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0151
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 VIMSISVTKAPPLPSIVC*CMFSLIGILEIRFVF 290
           V++S      PPL +IV   + S++  +  R+VF
Sbjct: 321 VVISAGADAYPPLAAIVLGAIGSIVFYIISRYVF 354


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 345 YFSALKSSSVAGL--NIHSALIFIFRDNKIRASNIA 446
           Y   +KS+    L  ++H  L F + D +++ SNIA
Sbjct: 46  YIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSNIA 81


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 360 KSSSVAGLNIHSALIFIFRDNKIRASNIAIH 452
           KS  V  +N    LIF   +    ASNI +H
Sbjct: 415 KSGKVDVINAAKELIFQIANELEDASNIPVH 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,787
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)