Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0149
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.88 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   1.5  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    26   6.2  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  CHIWFDTPAPFFNRYHTQTQ 102
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 225
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 AHPPFASWRNSEEARTDRPFQQL 598
           +HP F  W +S +  T + F+QL
Sbjct: 113 SHPGFGCWLSSVDINTQQSFEQL 135


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = -1

Query: 371 KVIYLQNSNKNKLFELSGL-----SLKSCRHD--FVTVESQTRAGDKSLRSFATVGCVEC 213
           +V+YL ++NK + FELS +        + +H   F+  +  T   ++    F  +    C
Sbjct: 379 RVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSC 438

Query: 212 LAVNSSVFCNF 180
           L +   +F N+
Sbjct: 439 LQLMMDIFGNY 449


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 439 PIVSRITIHWPSFYNVVTGKTLAYPT*SPCSTSPFRQL 552
           P++  +T+      +V+T KT AYP  S C    F  L
Sbjct: 318 PLLDTVTMVQSITPDVLTDKTAAYPYFSTCLDKEFMDL 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,076
Number of Sequences: 5004
Number of extensions: 51995
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)