Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0149
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0082 - 588269-588434,590800-591653                               29   3.7  
08_01_0083 - 604175-605776                                             29   4.9  
04_03_0353 - 14785648-14787213                                         29   4.9  
06_01_0092 - 775290-775691                                             28   8.6  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    28   8.6  

>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 61  TPAPFFNRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK 240
           TPAP F R+  +T  + +  P G   HI +  E      P++Q      +  S     AK
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLE-----RPEVQECFFTFSATSARKLKAK 275

Query: 241 ERSDLSPA 264
              ++S A
Sbjct: 276 ANDEMSGA 283


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 61  TPAPFFNRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 174
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>04_03_0353 - 14785648-14787213
          Length = 521

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 341 FYYCFVNK*LYHSXXXXXNGPRPLEGGPGTQFA 439
           F+  FVN    H       G R L+G PG +FA
Sbjct: 40  FHVTFVNNEFNHRRLLRARGARALDGAPGFRFA 72


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 573 RASSLLRQLAKGGCAARR 520
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 573 RASSLLRQLAKGGCAARRLSWVRQGFPSHDV 481
           R   L RQL++GGC  +RL W R G+ + +V
Sbjct: 94  RGLLLARQLSRGGCGEQRL-WAR-GYAAKEV 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,670
Number of Sequences: 37544
Number of extensions: 379661
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)