Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0148
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 37 0.003
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.19
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 30 0.25
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 28 1.3
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 3.1
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 26 5.4
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 26 5.4
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.4
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 26 5.4
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 5.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.2
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.5
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 25 9.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 9.5
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 9.5
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -1
Query: 293 NENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNIN-KKSMSEKSIAEEKHED 129
N+ +Q T SK + + + A +++G +PT N+N KK++++KS E+ ED
Sbjct: 206 NKEQQEKTQSKRGAAAPAAKPVSTAAPSKKGGKPTVNVNSKKTVADKSAYEDYIED 261
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -1
Query: 272 TASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDL 93
++S +++ ++ +N + Q+I K S + ++KH+ F R++ ++
Sbjct: 1152 SSSAVRAAMKADKIFPAVHENPPPLKTKQSIAKPSPHTLRVPQKKHKHFYHRDDGKYKSG 1211
Query: 92 TNTSTIKTNFENSFYNDEN 36
TN +T F+ DEN
Sbjct: 1212 TNLRKSETVDLPQFFIDEN 1230
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 194 PTQNINKKSMSEKSIAEEKHEDFVQRNE 111
P N N+KS +E SI E+K+ D ++NE
Sbjct: 180 PISNENEKSAAETSIKEDKNGDAAKKNE 207
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 299 KGNENEQRYTASKEPGSIQTEEQ-IEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFV 123
K E++ + ++ S + E IEKARK + + +N N K + + ++ E +
Sbjct: 111 KWKEDQMKRIQERDESSKKLRESNIEKARKAIDDFY--ENFNDKRDKVIAKSRKEQEKLL 168
Query: 122 QRNESRHSDLTNTSTI 75
+ NES+ + T+ I
Sbjct: 169 EENESKSTGTTSWERI 184
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 284 EQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKH 135
EQ+ S+E S+++ E I +N+E T + +KS KH
Sbjct: 228 EQKKLLSEEEESLKSVESIISNLENKESTTATSTLTDAGFGDKSSTAGKH 277
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 30 FTVLIIVKTILKVSLYGTRIGQIRMT*FVSLY 125
FTV + +K I LY R+GQ R+T + L+
Sbjct: 834 FTVFLDLKGIENSELYDVRMGQYRLTKCILLW 865
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 208 RFLRAFSICSSVCIDPGSLLAVYRCSFSFP 297
+ LR + +SVC D GS+ V CS + P
Sbjct: 718 QMLRKTDVSNSVCADCGSVKDVTWCSINIP 747
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Frame = +1
Query: 145 SAMDFSDILFLFIFCVGWYPSRF--------LRAFSICSSVCIDPGSLLAVYRCSFSFPF 300
S M LFLF +C W P + +R S C+SV G+ L + SF PF
Sbjct: 366 SVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVATS-GNWLGNFMISFFTPF 424
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = -1
Query: 287 NEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNES 108
+ Q ++ S +T ++ + ++KN + + N +S + S AE +E +S
Sbjct: 182 SSQSVASTMTKSSTKTSKK-KSSKKNSKSESNQDSSNDRSSTAPSTAESNNEHLSSSQKS 240
Query: 107 RHS 99
+HS
Sbjct: 241 KHS 243
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -1
Query: 401 PRGSRNTKTSYT*EN--SNACCPRKHSTSFKRNH**KGNENEQRYTASKEPGSIQTEEQI 228
P+ + N S+T E+ S +K + FK+N N+ E++Y+A++ S ++
Sbjct: 71 PKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQ--ASKSKNDEF 128
Query: 227 EKARKNREGYQPTQNINKKSMSEK 156
E + E P K++ K
Sbjct: 129 ELGGEENEDEMPLNGEFNKNVPAK 152
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 145 SAMDFSDILFLFIFCVGWYPSRFLRAFSICSSVCI 249
SA+ +L+ FI+ W+ R+L+ FS+ S I
Sbjct: 512 SAITSFSVLWDFIYETSWHIERWLKVFSVQSEFYI 546
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 406 PAPEVPETRKQAIPEKIQTPAVQENI-QHRSKET 308
P+ +VPE +++ + +++TP +E++ +H K++
Sbjct: 134 PSFDVPEEKEEEVEVEVKTPNAREDVTKHSGKKS 167
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 121 CTKSSCFSSAMDFSDILFLFI--FCVGWYPSRFLRAFSICSSVCI 249
C K +A+ +F+FI F V WY + A ++ S +CI
Sbjct: 1670 CKKFGAVLAALAHGITVFMFIIVFEVSWYLEAWCLAKTVLSMLCI 1714
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = -1
Query: 290 ENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 111
E+++ ++ E E+ E K +EG T+ + + S S+ +D E
Sbjct: 200 EDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQPSEEE 259
Query: 110 SRHSDLTNTSTIKTNFENS 54
+ SD+ + IKT + S
Sbjct: 260 EKTSDIQDRK-IKTPIKPS 277
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 119 RNESRHSDLTNTSTIKTNFEN--SFYNDENGEGFVMKTVKK 3
++ +RH +L N ST+K+ + S Y +EN E + +K+
Sbjct: 823 KSAARHEELKNLSTLKSLAKEFLSNYKEENLENSTLVQLKQ 863
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -1
Query: 242 TEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHS 99
T+++ +KAR NRE + + + +++ ++ I E D + + E + S
Sbjct: 46 TKDRNDKARLNRENARMRKKVIEENRKKEEIEERILTDRILQQERKKS 93
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 9.5
Identities = 6/11 (54%), Positives = 11/11 (100%)
Frame = +2
Query: 266 LPYTVVHFHFL 298
+PY+++HFH+L
Sbjct: 718 IPYSIIHFHYL 728
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -1
Query: 236 EQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRHSDLTNTSTIKTNFEN 57
+++ K E QP+ +N+ +E E+ ED + + H D N +I +
Sbjct: 521 QRVLKQNMTPEPSQPSPLVNRLKANEMHPVSEEPEDNREVYRNEHGDHFNFRSIPGLLKP 580
Query: 56 SFYND--ENGEGFV 21
S Y +G+ FV
Sbjct: 581 STYGSFKHHGKTFV 594
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,691
Number of Sequences: 5004
Number of extensions: 53864
Number of successful extensions: 223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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