Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0148
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains... 31 0.66
At5g17660.1 68418.m02070 expressed protein contains Pfam profile... 29 2.0
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 2.0
At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative ... 29 2.0
At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putativ... 29 2.0
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 2.0
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 29 2.7
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 29 2.7
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 29 3.5
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 29 3.5
At2g48160.1 68415.m06031 PWWP domain-containing protein 28 4.7
At5g53020.1 68418.m06585 expressed protein 28 6.2
At5g51130.1 68418.m06340 expressed protein contains similarity t... 28 6.2
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2... 28 6.2
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 28 6.2
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 6.2
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 28 6.2
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 27 8.2
At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 famil... 27 8.2
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 27 8.2
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 27 8.2
>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
weak similarity to Swiss-Prot:P41891 protein gar2
[Schizosaccharomyces pombe]
Length = 669
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -1
Query: 245 QTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNESRH-SDLTNTSTIKT 69
+T + +++++ + + Q + K + S+K +EKH+D + ES + S + + STI++
Sbjct: 4 RTTNNVVQSKRSTKSVRKDQKLQKTN-SQKKTEQEKHKDLDTKEESSNISTVASDSTIQS 62
Query: 68 NFENSF 51
+ S+
Sbjct: 63 DPSESY 68
>At5g17660.1 68418.m02070 expressed protein contains Pfam profile
PF02390: Putative methyltransferase
Length = 312
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 604 NFILRNHAGYGQRFAESQKNQIILEVRTDYRREIMEGMSLWQHRDIVDT 458
N IL+N G+ F +S +L+V D R ++ E ++ QH D VDT
Sbjct: 227 NSILQNLKPGGKIFVQSD----VLDVAQDMRDQLDEESNVLQHMDTVDT 271
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 299 KGNENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINK-KSMSEKSIAEEKHEDFV 123
K E ++ S++ S + E+ R +R+ + + + K S +S EEK + V
Sbjct: 86 KDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVV 145
Query: 122 QRNESRHSD 96
+R RH D
Sbjct: 146 ERGSRRHRD 154
>At2g24520.1 68415.m02929 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 931
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -1
Query: 290 ENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNIN----KKSMSEKS-IAEE 141
EN+ +T K+ G + E Q A++ G QP + N K S SE S IAE+
Sbjct: 837 ENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQ 891
>At1g80660.1 68414.m09465 ATPase 9, plasma membrane-type, putative /
proton pump 9, putative / proton-exporting ATPase,
putative strong similarity to SP|Q42556 ATPase 9, plasma
membrane-type (EC 3.6.3.6) (Proton pump 9) {Arabidopsis
thaliana}; contains InterPro accession IPR001757: ATPase,
E1-E2 type
Length = 954
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -1
Query: 290 ENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQN---INKKSMSEK--SIAEE-KHED 129
EN+ +T+ K+ G + E Q +A++ G QP Q N KS + IA++ K
Sbjct: 860 ENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSDMFNDKSTYRELSEIADQAKRRA 919
Query: 128 FVQRNESRHS 99
V R RH+
Sbjct: 920 EVARLRERHT 929
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 406 PAP--EVPETRKQAIPEKIQTPAVQENIQHRSKETIDR 299
PAP +VPE + + +TPAV EN++ R + +R
Sbjct: 655 PAPSFKVPEEKTELSKNNAETPAVSENVESRIEAARER 692
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -1
Query: 296 GNENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 117
G E + +Y K + E EK K+R + + KK + +EK ++ +
Sbjct: 8 GFEFQDKYKEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEKGKP 67
Query: 116 NESRHSDL-TNTSTIKTNFENSFYNDENGE 30
E + ++L TN + ++ N+ NGE
Sbjct: 68 LEEKKAELLTNAGHRENRVTDTVQNNSNGE 97
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 406 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 275
P PE PE ++Q + E P Q QH TI + N+G
Sbjct: 659 PLPEEPEPKRQKLDESALVPEDQFLAQHPGPATIRVSKPNENDG 702
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 203 LHDFYGL-FQFVLRFVSIQAPCLPYTVVHFHFLSINGFF*TMLNVFLDSRRLNFLRYSLF 379
LHD +G F + F + L +H H L+I G F + + LD R+ F
Sbjct: 109 LHDSFGKNFWQDVFFQGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDKNRIVGFGEDCF 168
Query: 380 SCFGNL 397
SC L
Sbjct: 169 SCMPKL 174
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 406 PAPEVPETRKQAIPEKIQTPAVQENIQHRSKETIDRKEMKMNNG 275
P PE PE ++Q E P Q QH TI + N+G
Sbjct: 672 PLPEEPEAKRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG 715
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = -1
Query: 266 SKEPGSIQTEEQIEKARKNREGYQPTQNI-----NKKSMSEKSIAEEKHEDFVQRNESRH 102
SK P +QTE+ +N +G Q ++ ++ +S + +D + + H
Sbjct: 230 SKSPSRLQTEKLQSSMLQNSDGGQTIDDVEDGALRREKRIRRSSGHSESDDVATSSLNSH 289
Query: 101 -SDLTNTSTIKTNFENSFYNDENG 33
SD N S I T ++ N+ NG
Sbjct: 290 GSDEENASEIATVESDNNRNEGNG 313
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -1
Query: 341 PRKHSTSFKRNH**KGNENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMS 162
P K++ S +R K + E R +E S + Q+ K RE Y P + + +
Sbjct: 422 PHKNNMSCRR----KNTKTEARGEQEREFDS-RDVSQVNATEKGRESYSPDELRHLTLKA 476
Query: 161 EKSIAEE--KHEDFVQRNESRHSDLTNTSTIKT 69
+S AEE ++E + NE + N+ K+
Sbjct: 477 AQSDAEEGSENERLLPENECTKREKANSKESKS 509
>At5g51130.1 68418.m06340 expressed protein contains similarity to
unknown protein (pir||T26512)
Length = 318
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 296 GNENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEK 156
G +N+Q+ K S + E+ +EK N E PTQ K+ ++
Sbjct: 2 GRDNDQKKNKKKRNRSNENEKSVEKVVANEEKV-PTQQKQKQQQGQQ 47
>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
protein-related contains weak hit to Pfam profile
PF05477: Surfeit locus protein 2 (SURF2)
Length = 291
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -1
Query: 272 TASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHED 129
T +KE G ++ E++ +K +KN + + +++ KK E E +HE+
Sbjct: 131 TPAKENG-VEDEDKKKKKKKNNKKKKNKKSVEKKKNGEDVADEIEHEN 177
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 338 RKHSTSF--KRNH**KGNENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSM 165
++ S SF KR +G + EQ +E G EE++EK + Q I K+
Sbjct: 364 KRKSMSFGEKRRTKRRGRKKEQEEEKQEEEGK---EEELEKVEYRGDEGTEKQEIPKQGD 420
Query: 164 SEKSIAEEKHED 129
E EEK E+
Sbjct: 421 EEMEGEEEKQEE 432
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -1
Query: 290 ENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 111
+ E+ +E + EE+ E+ARK E + + + KK E+ E + + +R E
Sbjct: 493 KREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREE 552
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -1
Query: 293 NENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRN 114
+E A+KE + +++E+ +A N+E ++ K +E ++AEEK D +
Sbjct: 306 DEKTTEAEANKENDTQESDEKKTEAAANKENETQESDVKK---TEAAVAEEKSNDMKAED 362
Query: 113 ESR 105
+R
Sbjct: 363 TNR 365
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = -1
Query: 296 GNENEQRYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQR 117
G +NE++ TAS+E G + + E ++ ++ NK+ S S E + ++
Sbjct: 254 GQQNEEKTTASEENGKGEKSMKDENGQQEEHTTAEEESGNKEEES-TSKDENMEQQEERK 312
Query: 116 NESRHSDLTNTS 81
+E +H + S
Sbjct: 313 DEKKHEQGSEAS 324
>At3g22590.1 68416.m02854 RNA pol II accessory factor Cdc73 family
protein contains Pfam PF05179: RNA pol II accessory
factor, Cdc73 family
Length = 415
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 278 RYTASKEPGSIQTEEQIEKARKNREGYQPTQNINKKSMSEKSIAEEKHEDFVQRNE 111
R +S + ++Q +++K E Y+P Q+ + E +IA+ + EDF + E
Sbjct: 96 RVASSDSIDFLLLQQQNAQSQKQNEEYRPDQDNSAFVSRENAIADMEVEDFGKSGE 151
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 290 ENEQRYTASKEPGSIQTEEQIEKARK 213
E+ RYT + P S+++EEQ EK ++
Sbjct: 477 ESATRYTYDRFPASVRSEEQEEKRKQ 502
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 290 ENEQRYTASKEPGSIQTEEQIEKARK 213
E+ RYT + P S+++EEQ EK ++
Sbjct: 477 ESATRYTYDRFPASVRSEEQEEKRKQ 502
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,712
Number of Sequences: 28952
Number of extensions: 273965
Number of successful extensions: 890
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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