Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0147
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.9  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.9  

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
 Frame = +3

Query: 240 ILPNSFILYLYTLLIKYSNWDKKGTQNDKTFTEHKPAVSTDYSTF---SKLLPSYDGSSR 410
           IL  SFI   +  ++++       T+ND + +  K   S+   TF   S  + S  GSS 
Sbjct: 235 ILRYSFISEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGTFASPSFNISSLSGSSN 294

Query: 411 --TLVFYIDSENVDNALNLIANSED-PNITFLIRNN 509
             T   Y  S ++   ++ +A+++  P+ +FL R +
Sbjct: 295 IGTAPSYEISSSIGANVSSLAHTQRLPSFSFLRRRD 330


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 270 YTLLIKYSNWDKKGTQNDKTFTEHKPAVSTDYSTFSKLLPSYDGSSR 410
           Y+ +   +N D K   ++ TF+   P  S +YS FS  L   D  +R
Sbjct: 162 YSNVFYPNNCDSKEVASETTFSLDAPNNSVNYSYFSPNLLGNDSKTR 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,252
Number of Sequences: 5004
Number of extensions: 39745
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)