Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0147
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   3.0  
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                28   7.0  

>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 360  DYSTFSKLLPSYDGSSRTLVFYIDSENVDNALNLIANSEDPNI 488
            D+S +  L+  YD      V  ID +NVDN  N +    D ++
Sbjct: 1706 DFSNYEGLISLYDDDIAQCVELIDPDNVDNNRNDVITKTDNDV 1748


>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 288 YSNWDKKGT---QNDKTFTEHKPA--VSTDYSTFSKLLPSYDGSSRTLVFYIDSENVDNA 452
           Y+N DKK T     DK  T +      +T Y+   K    Y+   +T  FY    NVDN 
Sbjct: 150 YNNVDKKATFYNNVDKKATSYNNVDNKATSYNNVDKKATFYNNVDKTATFY---NNVDNK 206

Query: 453 LNLIANSEDPNITF 494
                N+ D   TF
Sbjct: 207 ATFY-NNVDKKATF 219


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -1

Query: 450 HYP---HFHYRCKIRAFCCYR 397
           HYP   H+++RC    +CCYR
Sbjct: 46  HYPCYRHYYHRCYRHHYCCYR 66


>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 617 HFRVLVY--RFFYTMLLLYLSRFLHLGFVTKRQQLYHL-IISNKKCYIRV 477
           HFR+L++     +  LLL+L   LHL F+   + L HL ++ + + + RV
Sbjct: 300 HFRLLLHFRLLLHLRLLLHLRLLLHLRFLLHLRLLLHLRLLLHFRLFTRV 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,548
Number of Sequences: 59808
Number of extensions: 263911
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)