Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0147
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 369 TFSKLLPSYDGSSRTLVFYID--SENVDNALNLIAN-SEDPNITFLIR 503
           ++SKLL +YDG+    V+ +   +E  D  L  +AN  E+ +I F+ R
Sbjct: 63  SYSKLLDNYDGAKHAKVWRLHNVTEAYDTKLGTLANVMENSHIGFIDR 110


>Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical
           protein T07C5.1b protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 369 TFSKLLPSYDGSSRTLVFYID--SENVDNALNLIAN-SEDPNITFLIR 503
           ++SKLL +YDG+    V+ +   +E  D  L  +AN  E+ +I F+ R
Sbjct: 63  SYSKLLDNYDGAKHAKVWRLHNVTEAYDTKLGTLANVMENSHIGFIDR 110


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 222 FPRFSTILPNSFIL-YLYTLLIKYSNWDKKGTQNDKTFTEHKPAVSTDY-STFS-KLLPS 392
           FP  +T++PNS +L Y  + ++   +W++       +  ++   V  D  +TF+    P+
Sbjct: 146 FPHLTTVIPNSLMLGYAASKMLTTFHWNRVALLYYFSDVKYCSGVMNDIEATFNDPSTPN 205

Query: 393 YDGSSRTLVFYIDSENVDNALNLI 464
            +   +  ++  D+E  DN    +
Sbjct: 206 VNIVIKAEIYLNDNETTDNVFQTV 229


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 222 FPRFSTILPNSFIL-YLYTLLIKYSNWDKKGTQNDKTFTEHKPAVSTDY-STFS-KLLPS 392
           FP  +T++PNS +L Y  + ++   +W++       +  ++   V  D  +TF+    P+
Sbjct: 146 FPHLTTVIPNSLMLGYAASKMLTTFHWNRVALLYYFSDVKYCSGVMNDIEATFNDPSTPN 205

Query: 393 YDGSSRTLVFYIDSENVDNALNLI 464
            +   +  ++  D+E  DN    +
Sbjct: 206 VNIVIKAEIYLNDNETTDNVFQTV 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,765,418
Number of Sequences: 27780
Number of extensions: 207317
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)