Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0147
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 26  PHYNWCNQEVV 58
           P++NW NQ+V+
Sbjct: 838 PYWNWSNQDVI 848


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 ILPNSFILYLYTLLIKYSNWDKK 308
           IL    I  + T LIK+ NWD K
Sbjct: 249 ILAKKEIKGVPTYLIKWKNWDLK 271


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  SGSRIYLYRAYKINSVKSTLVASRQE 123
           SGSR  +Y+A K +  K    ++++E
Sbjct: 589 SGSRFTIYKANKASKKKREKSSAKKE 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,978
Number of Sequences: 438
Number of extensions: 2703
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)