Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0147
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29450.1 68417.m04204 leucine-rich repeat protein kinase, put...    28   5.7  
At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase, put...    27   7.6  
At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase, put...    27   7.6  

>At4g29450.1 68417.m04204 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 863

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 435 ENVDNALNLIANSEDPNITF 494
           ENVD+ L L   S+DPN+ F
Sbjct: 262 ENVDDPLELFWTSDDPNVRF 281


>At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase (CDS) GI:2181182 from
           [Arabidopsis thaliana]
          Length = 365

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 614 FRVLVYRFFYTMLLLYLSRFLH---LGFVTKRQQLYHLIISNKKCYIRV 477
           FR+L + FF+T +L    R L    +  VT  + LY L+ S  K ++ +
Sbjct: 47  FRLLNWHFFFTAMLFVYGRILSQRLVNTVTPDKVLYRLVTSLIKYHMAI 95


>At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase (CDS) GI:2181182 from
           [Arabidopsis thaliana]
          Length = 423

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 614 FRVLVYRFFYTMLLLYLSRFLH---LGFVTKRQQLYHLIISNKKCYIRV 477
           FR+L + FF+T +L    R L    +  VT  + LY L+ S  K ++ +
Sbjct: 105 FRLLNWHFFFTAMLFVYGRILSQRLVNTVTPDKVLYRLVTSLIKYHMAI 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,271
Number of Sequences: 28952
Number of extensions: 186454
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)