Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0145
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   5.5  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   7.3  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.3  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.7  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 250 SQVLSVKNIAILLAYCPRTYFN*FLHQTIIS*DEAVYLYREPGITMTYVA 399
           +Q + ++NI I+L  CP  + N  +H    + D+ +Y+  E    +T +A
Sbjct: 298 TQYVILRNIQIILEQCPEMFAN-DIHFFYCNFDDPIYVKLEKLDILTKIA 346


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = +3

Query: 66   NPAKDILYLSYIYLPLAGFEPATTLCSGHVTYHYTRRPVS-LQQYRPVSFLVMLTS*AKA 242
            NP    LY+  +     G E  T +   +V +H    P++ L   +P+     +T+    
Sbjct: 1067 NPLPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPLP----ITALHDP 1122

Query: 243  MLESGFICQKHRDFVGLLSSHLFQLI-STPNHYFLG 347
            +LE   IC K   F   + +  F  I  T  + F+G
Sbjct: 1123 VLEG--ICAKRFSFFNAVQTQFFHTIYHTDTNIFVG 1156


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
 Frame = +2

Query: 41  TYIYNIHP*SCKRHFIFI----IHIS-SLGGIRTCDHLV*WPCHLPLHQTASKFTTVSPS 205
           +Y YNI      R+FI      I++   +G  RT D L+ +P  +            SPS
Sbjct: 115 SYPYNIERADVVRYFILYKYGGIYLDLDVGCNRTLDPLLHYPAWV---------RRTSPS 165

Query: 206 *LFGNVNVIGKGYARVRFYLSKTSRFCWPTVLALISINFYTKPLFL 343
            +  NV    KG+  +   +    RF +      +++ + T PLFL
Sbjct: 166 GISNNVMGFAKGHPFLLQVVRNLPRFAFNYHFPYLTVMYSTGPLFL 211


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 434 VSLKYFQIFKSKKIVNQVDGHCQGGINTSRPAIKQAECRQ 553
           V LK  ++ K ++ +     HCQ  + T   A+++  CR+
Sbjct: 199 VELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRR 238


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 87  YLSYIYLPLAGFEPATTLCSGHVT 158
           YL  +YLP+ GF  A  +C  H T
Sbjct: 58  YLIIVYLPIEGFS-ANHMCISHGT 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,372
Number of Sequences: 5004
Number of extensions: 58661
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)