Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0145
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1109 + 24364464-24364710,24366572-24366638,24366639-243667...    29   3.3  
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522...    28   5.7  
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344...    28   7.6  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           28   7.6  

>08_02_1109 +
           24364464-24364710,24366572-24366638,24366639-24366746,
           24367200-24367332,24368096-24368167,24368754-24368886,
           24369310-24369470
          Length = 306

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 634 FFFFWSVSALLRVVTTLVQF-LQPLPPMLSA 545
           FFF  SVS +LR V  +++F LQ  PP+  A
Sbjct: 101 FFFDRSVSCILRAVQKILRFTLQSAPPLCDA 131


>04_03_0205 +
           12649724-12650191,12651493-12652025,12652114-12652239,
           12652625-12652724,12652880-12652899,12653035-12653137,
           12653213-12653351,12653448-12653662,12653772-12654320
          Length = 750

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 412 CSHKN-QKCLVKIFSNL*VEEDCQPGGRTLSRR 507
           C+H   +KCL+  + NL + E+   GGRTL  R
Sbjct: 515 CAHNFCKKCLLGSYDNLSLTEERSRGGRTLRAR 547


>07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,
            3445875-3445880,3445984-3446131,3446237-3446394,
            3446473-3446676,3446803-3447038,3447227-3447439,
            3447984-3448082,3448262-3448371,3448581-3448655,
            3449407-3449485,3449563-3449709,3449785-3449865,
            3449975-3450094,3450580-3450702,3451382-3451459,
            3451586-3451674,3451760-3451868,3452117-3452227,
            3452557-3452612,3452697-3452874,3452971-3453072,
            3453160-3453231,3453350-3453415,3453502-3453567,
            3453676-3453759,3454638-3454754,3455753-3455827,
            3455912-3455995,3456138-3456179
          Length = 1148

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 63   HNPAKDILYLSYIYLPLAGFEPATTLCSGHVTYHY-TRRPVSLQQYR 200
            +N   DILY   + +PL   +   TL    VTYH+ T+  VS+   R
Sbjct: 911  YNQTSDILYYEVLDIPLPELQALKTL---KVTYHHGTKDEVSVHSIR 954


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +3

Query: 519 AVPPLSRPNADNIGGSGCKNWTKVVTTLSNAETDQKKKKKIR 644
           A PPL+ P++D+ GG    +  + +  +     ++K+K++++
Sbjct: 96  AAPPLALPSSDSGGGGNDNDDDEALCAIMRRAREKKRKRRLQ 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,680
Number of Sequences: 37544
Number of extensions: 390405
Number of successful extensions: 960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)