Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0145
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_53816| Best HMM Match : DAO (HMM E-Value=2.5)                       28   5.9  

>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/81 (25%), Positives = 30/81 (37%)
 Frame = +2

Query: 122 RTCDHLV*WPCHLPLHQTASKFTTVSPS*LFGNVNVIGKGYARVRFYLSKTSRFCWPTVL 301
           RT   +      L +H    K  T     +F    V  K     R +LS+ S  CWP  L
Sbjct: 684 RTASDITPLLTQLEIHVAEDKLFTTRVRDIFKETVVTHKSAKESRQWLSEPSYGCWPQQL 743

Query: 302 ALISINFYTKPLFLRTKRFIY 364
                 F    ++  T+R +Y
Sbjct: 744 NFAVWGFQRFHVYFTTRRILY 764


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 481 VDNLLRLKDLKIF*RDISGFYGY 413
           +D   R K++K F  D+ GFYGY
Sbjct: 78  LDERCRAKNIKFFASDVFGFYGY 100


>SB_53816| Best HMM Match : DAO (HMM E-Value=2.5)
          Length = 414

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/69 (24%), Positives = 26/69 (37%)
 Frame = +2

Query: 158 LPLHQTASKFTTVSPS*LFGNVNVIGKGYARVRFYLSKTSRFCWPTVLALISINFYTKPL 337
           L +H    K  T     +F    +  K     R +LS+ S  CWP  L           +
Sbjct: 184 LEIHVAEDKSFTTRVRDIFKETVITHKSVKESRRWLSEPSYGCWPQQLNFAVRGLLRFHV 243

Query: 338 FLRTKRFIY 364
           +  T+R +Y
Sbjct: 244 YFTTRRILY 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,272,205
Number of Sequences: 59808
Number of extensions: 438371
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)