Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0145
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00228-1|CAA68371.1|  944|Drosophila melanogaster protein ( Dros...    30   2.4  
BT003273-1|AAO25030.1|  941|Drosophila melanogaster LD15893p pro...    30   2.4  
AE014297-1834|AAF55043.1|  941|Drosophila melanogaster CG8573-PB...    30   2.4  
AE014297-1833|AAF55044.1|  941|Drosophila melanogaster CG8573-PA...    30   2.4  
AF254867-1|AAF77184.1| 1482|Drosophila melanogaster SNS protein.       29   7.4  
AE014296-2816|AAN11745.1|  288|Drosophila melanogaster CG13029-P...    29   7.4  
AE013599-717|AAF59040.2| 1479|Drosophila melanogaster CG33141-PA...    29   7.4  
AE013599-716|ABI31083.1| 1542|Drosophila melanogaster CG33141-PB...    29   7.4  

>Y00228-1|CAA68371.1|  944|Drosophila melanogaster protein (
           Drosophila melanogastersu(Hw) gene for suppressor of
           hairy wing. ).
          Length = 944

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 458 FKSKKIVNQVDGHCQGGINTSRPAIKQAECRQHWRKRL---QKLDQGGHDPQ 604
           FK++K   Q++ H +    T RP    AEC++++R      + +D+G H P+
Sbjct: 532 FKTEK---QLERHVKTHSRTKRPVFSCAECKRNFRTPALLKEHMDEGKHSPK 580


>BT003273-1|AAO25030.1|  941|Drosophila melanogaster LD15893p
           protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 458 FKSKKIVNQVDGHCQGGINTSRPAIKQAECRQHWRKRL---QKLDQGGHDPQ 604
           FK++K   Q++ H +    T RP    AEC++++R      + +D+G H P+
Sbjct: 532 FKTEK---QLERHVKTHSRTKRPVFSCAECKRNFRTPALLKEHMDEGKHSPK 580


>AE014297-1834|AAF55043.1|  941|Drosophila melanogaster CG8573-PB,
           isoform B protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 458 FKSKKIVNQVDGHCQGGINTSRPAIKQAECRQHWRKRL---QKLDQGGHDPQ 604
           FK++K   Q++ H +    T RP    AEC++++R      + +D+G H P+
Sbjct: 532 FKTEK---QLERHVKTHSRTKRPVFSCAECKRNFRTPALLKEHMDEGKHSPK 580


>AE014297-1833|AAF55044.1|  941|Drosophila melanogaster CG8573-PA,
           isoform A protein.
          Length = 941

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 458 FKSKKIVNQVDGHCQGGINTSRPAIKQAECRQHWRKRL---QKLDQGGHDPQ 604
           FK++K   Q++ H +    T RP    AEC++++R      + +D+G H P+
Sbjct: 532 FKTEK---QLERHVKTHSRTKRPVFSCAECKRNFRTPALLKEHMDEGKHSPK 580


>AF254867-1|AAF77184.1| 1482|Drosophila melanogaster SNS protein.
          Length = 1482

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 500 QGGINTSRPAIKQAECRQHWRKRLQKL 580
           Q  I   + A K+  CRQHW K LQ L
Sbjct: 28  QQHIKWQQHATKRRRCRQHWIKHLQLL 54


>AE014296-2816|AAN11745.1|  288|Drosophila melanogaster CG13029-PC,
           isoform C protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 147 HYTRWSQVRIPPREDICMINIKCLL-QDYGCILYIYVCV**KSYIYF 10
           H+    Q+ +PPR   C +   C+L +D+ CI +   CV   +Y YF
Sbjct: 105 HFCDHCQMLVPPRSWHCKVCECCILRRDHHCI-FTATCVGHTNYRYF 150


>AE013599-717|AAF59040.2| 1479|Drosophila melanogaster CG33141-PA,
           isoform A protein.
          Length = 1479

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 500 QGGINTSRPAIKQAECRQHWRKRLQKL 580
           Q  I   + A K+  CRQHW K LQ L
Sbjct: 26  QQHIKWQQHATKRRRCRQHWIKHLQLL 52


>AE013599-716|ABI31083.1| 1542|Drosophila melanogaster CG33141-PB,
           isoform B protein.
          Length = 1542

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 500 QGGINTSRPAIKQAECRQHWRKRLQKL 580
           Q  I   + A K+  CRQHW K LQ L
Sbjct: 26  QQHIKWQQHATKRRRCRQHWIKHLQLL 52


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,670,013
Number of Sequences: 53049
Number of extensions: 663823
Number of successful extensions: 1373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)