Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0144
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   7.0  
SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)          28   7.0  

>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 353  YYFAIRKFLS*YVTNTCSRTNSVIRKHLIRNEPQSISSQMTE 228
            Y F ++  L     N CSR     R+H++ N P S+   M +
Sbjct: 1351 YAFLVKDDLDPASENCCSRNELSERRHVLNNSPLSLHGTMPD 1392


>SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 456

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 31  KAPYLCFVPYPNGW*HSNWNIHISALLLRAVFSRSIIRNLS*LLRYRE 174
           K   LCF+  P  W H +W+     +LL  + +R +  N    L YRE
Sbjct: 260 KTTRLCFIYRPQNWLHFSWSY---GVLLWEIETRGLTPNAG--LNYRE 302


>SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)
          Length = 1292

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 55   PYPNGW*HSNWNIHISALLLRAVFSRSIIRNL-S*LLRYRER*KTRTKHTGALSQSINSS 231
            P PN W + N+N  + A L +++  R  + ++ S L+   E   ++   T   +Q+ + S
Sbjct: 861  PNPNTWSYGNFNEKLEAYLNQSIIVRISVEDIPSCLIECLE--NSKCLSTNMAAQANSES 918

Query: 232  VIWLDIL 252
              W ++L
Sbjct: 919  KYWCELL 925


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,702,612
Number of Sequences: 59808
Number of extensions: 258622
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)