Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0143
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.71 
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    25   6.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   6.6  

>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 173 TYVFHTNLDIITVNIIEKSNMH*CDGLHFNYYRPLFFFI 57
           +YVFH  + +I V I  + N+   D    N YRP F F+
Sbjct: 299 SYVFHKKIQLIKVTISSEMNILKSD--FANLYRPYFNFL 335


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 115 LLFSIILTVIISKLV*NTYVYNRVL 189
           LLFS++L ++++ LV N + Y + L
Sbjct: 18  LLFSVVLIIVMTTLVFNGHDYKQTL 42


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 112 ILLFSIILTVIISKLV*NTYVYNRVLQFHSSFNI 213
           +LL  IIL  +++ ++ + YV+ R + F +SFNI
Sbjct: 247 MLLTGIIL--LVAPILLSYYVWRRRIHFETSFNI 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,833
Number of Sequences: 5004
Number of extensions: 41577
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)