Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0143
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81524-6|CAB04254.2|  308|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81103-8|CAB03212.2|  308|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z81524-6|CAB04254.2|  308|Caenorhabditis elegans Hypothetical
           protein F32H5.6a protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 618 ICMYVKSVLSGTIVSIKLCNCNEGYALVSTA-IAFIFIS 505
           I MY++SVL  T+  I + NC   + L S     FIF+S
Sbjct: 217 ISMYIQSVLQDTLHLIDMINCTILFKLNSAIWYQFIFLS 255


>Z81103-8|CAB03212.2|  308|Caenorhabditis elegans Hypothetical
           protein F32H5.6a protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 618 ICMYVKSVLSGTIVSIKLCNCNEGYALVSTA-IAFIFIS 505
           I MY++SVL  T+  I + NC   + L S     FIF+S
Sbjct: 217 ISMYIQSVLQDTLHLIDMINCTILFKLNSAIWYQFIFLS 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,846
Number of Sequences: 27780
Number of extensions: 220475
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)