Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0141
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 200 1e-52
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 2e-26
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 108 5e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 5e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 3e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 3e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 5e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.075
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.30
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.40
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.7
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.5
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 6.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 6.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 200 bits (488), Expect = 1e-52
Identities = 97/119 (81%), Positives = 101/119 (84%), Gaps = 2/119 (1%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 436
DEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 437 REKMTQIMFETFNTPAMYVAIQAVSRCTRSGRTTGIVLDSRDRCLPTPVPIYQ--RIPH 607
REKMTQI+FETFN PA YVAIQAV SGRTTGIVLDS D T VPIY+ +PH
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT-VPIYEGYALPH 173
Score = 110 bits (265), Expect = 1e-25
Identities = 48/53 (90%), Positives = 52/53 (98%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (271), Expect = 2e-26
Identities = 50/128 (39%), Positives = 85/128 (66%)
Frame = +2
Query: 218 RDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 397
+ G + ++ DEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 398 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVSRCTRSGRTTGIVLDSRDRCLPT 577
+LLTE P+NP ANREKM + MFE + +YVAIQAV G ++G+V+DS D +
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDG-VTH 161
Query: 578 PVPIYQRI 601
VP+Y+ +
Sbjct: 162 IVPVYESV 169
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 206
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 108 bits (260), Expect = 5e-25
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Frame = +2
Query: 260 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 436
EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 437 REKMTQIMFETFNTPAMYVAIQAVSRCTRSGRTTGIVLDSRDRCLPTPVPIY 592
+EK+ + +ET N PA+ ++Q V S RTTGIVL+ D L VPIY
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDG-LTHSVPIY 171
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.5 bits (227), Expect = 5e-21
Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Frame = +2
Query: 287 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 466
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 467 TFNTPAMYVAIQAVSRCTRSGRT--------TGIVLDSRD 562
+FN +Y+A+QAV S + TG V+DS D
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGD 188
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 254
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.7 bits (163), Expect = 3e-13
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +2
Query: 284 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 463
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 464 ETFNTPAMYVAIQAVSRCTRSGRTTGIVLD 553
E+ PA Y+A Q SG+ T ++D
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVD 152
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 59.7 bits (138), Expect = 3e-10
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +2
Query: 308 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 487
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 488 YVAIQAVSRCTRSGRTTGIVLD-SRDRCLPTPV 583
Y+ QAV + ++T +++D D TPV
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPV 166
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 59.7 bits (138), Expect = 3e-10
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 478
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 479 PAMYVAIQAVSRCTRSGR--TTGIVLD 553
P++ I + + + ++GIVL+
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLN 171
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 209
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 5e-04
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 466
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 467 TFNTPAMYVAIQAVSRCTRSGRTTGIVLD 553
P +A + + G G+V+D
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVID 200
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.075
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 359 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 502
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +3
Query: 480 PPCTSPSKPCLAVRVPVVPPVSCW----TPGTGVFPHPCPFTK 596
PP +P P +V VP VPP S TP G+ P P P K
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.40
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 331 IPVSDDSVFDGVFEGQDTSFALCLIST*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 152
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 151 PALHIP 134
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 253 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 95
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 401 LLTEAPLNPKANREKMTQIMFETFN 475
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 235 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 143
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 255 LHKSPSVPYRPSRPDGGAFPRSRGTR 178
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 504 PCLAVRVPVVPPVSCWTP 557
PC R + PPV+C TP
Sbjct: 621 PCTCGRTRLYPPVACGTP 638
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 557 GSPARYRWYDRNAYSETRLG 498
G P + W + +YS+T+LG
Sbjct: 292 GRPTSFTWLSKASYSKTKLG 311
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 498 SKPCLAVRVPVVPPVSCWTPGTGVFPHPC 584
+KP L V V P + W P G P PC
Sbjct: 2296 AKPSLPVSDRVFPNLGAWNPSEG--PGPC 2322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,424
Number of Sequences: 5004
Number of extensions: 62131
Number of successful extensions: 194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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