Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0140
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   6.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   6.9  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +2

Query: 479 QRSASNVPRPSPSRCLRQSAAGPTEPKNRLSRSLQAACKALSCTRGFG 622
           ++S    P PS +     +    T      SRS+  +C ++  T  +G
Sbjct: 68  KKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYG 115


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -1

Query: 578 SSSTNDSSVPLVPLPTDEDNGSERVEEHWMRFFAQPT 468
           +++     +P  P+PT E   ++  E    +   QPT
Sbjct: 383 NAALKSDEIPPEPVPTPEPQPTQTTESEPTQASEQPT 419


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 458 SYIYLGNYPNYTL 420
           +Y +LG YPN TL
Sbjct: 57  NYAFLGVYPNGTL 69


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 624 PPKPRVHESALQAACKL 574
           PP+   +++++ AACKL
Sbjct: 62  PPQDSPYDASVAAACKL 78


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 41  TSTT*MRHTP*DIVLRSQYSHNGCPTLQTETHYCFTAEI 157
           TS     H   DIV   Q  HN    L  E + CF  +I
Sbjct: 196 TSLIHSTHLNGDIVKEHQNLHNKICNLIDEFNECFGLQI 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,395
Number of Sequences: 336
Number of extensions: 3144
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)