Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0140
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    27   3.2  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.8  

>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 596 PCKLLASSSTNDSSVPLVPLPTDEDNGS-ERVE 501
           P  L ASS+     +P +P  T EDN + ERVE
Sbjct: 234 PAHLSASSTVGPRILPSLPKDTTEDNPALERVE 266


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 224 PSAKGSNKSSFTGGRTSCESARLF 153
           P  KG N +SFT  R    + RLF
Sbjct: 238 PREKGDNPASFTSSRNKRSNERLF 261


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 596 PCKLLASSSTNDSSVPLVPLPTDEDNGSERVEEHWM 489
           P   + SSS  + + PLVP     D  S     HWM
Sbjct: 835 PLSCIPSSSLTNFTQPLVPFSVSRDPISFYHPLHWM 870


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 245 NKFFTNEPSAKGSNKSSFT 189
           N+FF N PS  GS + SF+
Sbjct: 355 NEFFNNLPSIAGSQEPSFS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,531
Number of Sequences: 5004
Number of extensions: 51687
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)