Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0140
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0198 + 21890523-21891002                                         29   2.5  
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230...    28   5.8  
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877...    28   5.8  
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    28   5.8  
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845...    28   7.7  

>03_05_0198 + 21890523-21891002
          Length = 159

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 318 SPAKARGTAGGADGLQYERSGSAPLSRRTWA 410
           +PA ARG   G DG +   SGSAP+  R W+
Sbjct: 53  APAPARGGRSGGDGGR--GSGSAPVPARQWS 81


>08_01_0282 +
           2299688-2299859,2300314-2300384,2300780-2300861,
           2300949-2301067,2301338-2301415,2301500-2301619,
           2301729-2301788
          Length = 233

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 297 WGRPVQCSPAKARGTAGGADGLQYERSGSAPLSR 398
           WG     + A A G+A G DG     SG A + R
Sbjct: 4   WGTGSSAASAAAEGSAAGGDGAARSSSGGAAVIR 37


>04_04_0158 -
           23187070-23187264,23187347-23187477,23187550-23187763,
           23187834-23187932,23188034-23188156,23188247-23188366,
           23188447-23188506,23188592-23188884,23189554-23189707,
           23189813-23190130,23190668-23190798,23191001-23191586,
           23192125-23192739
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 613 PGTRKRLASCLQAPRQTILRFRWSRCRLTKTTARRGSRNI 494
           PG R+  +S LQ    ++++  W RC + K   +RG+ NI
Sbjct: 398 PGYRR--SSNLQGLAASMIKL-WERCEVAKVAIKRGAENI 434


>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 207 TSFCTRFVGKKFI--KVYYVPVYRIAGWPGARWGRPVQ 314
           T F   ++G   I    YY+PVY+  G+ G R   PVQ
Sbjct: 117 TLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHPVQ 154


>03_03_0129 -
           14684003-14684123,14684205-14684323,14684406-14684501,
           14684605-14684712,14684974-14685060,14685135-14685338,
           14685429-14685488,14686096-14686264,14686400-14686473,
           14686586-14686897,14687054-14687212
          Length = 502

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 574 PRQTILRFRWSRCRLTKTTARRGSRNIGCASL 479
           P  TILRF  +  R   T ARR   NIG A +
Sbjct: 22  PSATILRFPPNFVRQLSTKARRNCSNIGVAQI 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,017,202
Number of Sequences: 37544
Number of extensions: 403013
Number of successful extensions: 1370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)